PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT09280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 18822.5 Da PI: 9.7721 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ EMT09280 105 WVCARCAKGYAVQSDYKAHLKTC 127 58*******************98 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.001 | 135 | 152 | 5 | 22 |
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 dCg++Fsr +++ H+ EMT09280 135 DCGRVFSRVESFIEHQDA 152 9**************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MALVKSHHQM LASSSTSSSS PSSKQQPPPP PPLAPPPPAT DQPSPAKRKR RPPGTPDPDA 60 EVVALTPRTL LESDRCLHHD PAHALGDLVG IKKHCGRKHG GRRQWVCARC AKGYAVQSDY 120 KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSGRMRG EAGAVPSALP VICFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-19 | 101 | 170 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 4e-19 | 101 | 170 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376150 | 1e-144 | AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014504096.1 | 5e-62 | protein indeterminate-domain 16 isoform X1 | ||||
Refseq | XP_020240417.1 | 6e-62 | zinc finger protein SHOOT GRAVITROPISM 5 | ||||
Refseq | XP_022845029.1 | 2e-62 | protein SHOOT GRAVITROPISM 5-like isoform X2 | ||||
Refseq | XP_022889934.1 | 4e-62 | protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | F4IPE3 | 5e-59 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | M8B6Q8 | 1e-124 | M8B6Q8_AEGTA; Uncharacterized protein | ||||
STRING | EMT09280 | 1e-124 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 4e-58 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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