PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT09276 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 558aa MW: 61130.9 Da PI: 6.1679 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 220 | 267 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++++G g+W++ +++ g+ R++k+c++rw +yl EMT09276 220 KGPWTPEEDEKLLAHIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 267 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 273 | 318 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia ++ +Rt++++k++w+++l EMT09276 273 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLS-RRTDNEIKNYWNTHL 318 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF75005 | 1.14E-8 | 1 | 84 | IPR023296 | Glycosyl hydrolase, five-bladed beta-propellor domain |
Gene3D | G3DSA:2.115.10.20 | 7.4E-5 | 5 | 84 | IPR023296 | Glycosyl hydrolase, five-bladed beta-propellor domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-26 | 211 | 270 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.326 | 215 | 267 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-29 | 217 | 314 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-14 | 219 | 269 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 220 | 267 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.21E-12 | 222 | 267 | No hit | No description |
PROSITE profile | PS51294 | 25.189 | 268 | 322 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-25 | 271 | 322 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 272 | 320 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 273 | 318 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.81E-11 | 275 | 318 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MAYEGLDGNG GVSIGLAVSE DGLRGWRRCS ESPALCSSED DDEWDVAGVG APCLVQMDGP 60 YDWRLYYMGV GKDGEAAIGM AYSEGQGLPR FNSYFDGVMD VLSSFAVSIT FIDHFVFFPF 120 PPLFSKCFLT QNCKQKRKLP YGLTNLDLVS QWRGPSIGEE LYVFLHPVTC TKTKPSKGHL 180 CHDDKLLCTQ LSALGFRKAA AYYATPMGRS PCCDKVGLKK GPWTPEEDEK LLAHIEEHGH 240 GSWRALPSKA GLQRCGKSCR LRWTNYLRPD IKRGKFSLQE EQTIIQLHAL LGNRWSAIAT 300 HLSRRTDNEI KNYWNTHLKK RLAKMGIDPV THKAASGAPV GTADDVRSAK AAASLSHMAQ 360 WESARLEAEG RLARESTMRT AASTPTSITL HPINLPEPTT SPCLGMLQPW QGAKLDLESP 420 TSTLTFIGNN NSVSLGISEG DPTTCKLRSD DPEREEDSVR KFLRQQQMQG LEGAERGDEH 480 IIGCEEPWFQ GTAGVGAGFT DMLHDALDCW GESSNGQAEL SGQVSGDGES SSSYWSGILG 540 MVVTSELPPS HPHPPAFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 218 | 322 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358325 | 0.0 | AK358325.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1073M23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161266.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | Q9LE63 | 1e-103 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | M8B5P1 | 0.0 | M8B5P1_AEGTA; Transcription factor MYB39 | ||||
STRING | EMT09276 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5609 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-102 | myb domain protein 16 |