PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT09055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 293aa MW: 33002.2 Da PI: 6.155 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.2 | 6.8e-31 | 45 | 95 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+ EMT09055 45 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 95 79***********************************************95 PP | |||||||
2 | K-box | 20.7 | 1.8e-08 | 202 | 233 | 69 | 100 |
K-box 69 KnellleqieelqkkekelqeenkaLrkklee 100 +nell+++ie++q++e elq++n L++k++e EMT09055 202 QNELLCAEIEYMQRREMELQNNNFFLKEKVAE 233 89***************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.1E-41 | 37 | 96 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.543 | 37 | 97 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.70E-39 | 38 | 98 | No hit | No description |
SuperFamily | SSF55455 | 1.03E-29 | 38 | 117 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 39 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-32 | 39 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-26 | 46 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-32 | 59 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-32 | 74 | 95 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MQILNEQLAA PSTGLMVKES ASPGSGSGSA GGAAEKMGRG RIEIKRIENT TNRQVTFCKR 60 RNGLLKKAYE LSVLCDAEVA LIVFSGRGRL YEYSNNSNSV TAAYKIICVY VSHTQIDVKA 120 ILRTEPMAVT ARNEEFSSLM FDSGTLVVCV KATIERYKKA TSDISSAGTV AEINAQHYQQ 180 EEAADNHLAE LQQFLTFTIN LQNELLCAEI EYMQRREMEL QNNNFFLKEK VAETERGQQQ 240 TLNMMGAAST SNEYEQNMIH CDPRTFLQFN FMQQQPQYYS QQEDRKSFNS VGR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-18 | 37 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM502863 | 1e-161 | AM502863.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM2 (WM2 gene). | |||
GenBank | BT008912 | 1e-161 | BT008912.1 Triticum aestivum clone wpa1c.pk001.p9:fis, full insert mRNA sequence. | |||
GenBank | JN874386 | 1e-161 | JN874386.1 Triticum aestivum cultivar A3017 MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176048.1 | 1e-123 | MADS-box transcription factor 58-like isoform X2 | ||||
Swissprot | Q2V0P1 | 3e-93 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | M8B608 | 0.0 | M8B608_AEGTA; MADS-box transcription factor 58 | ||||
STRING | EMT09055 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-57 | MIKC_MADS family protein |