PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT09031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 224aa MW: 25754.1 Da PI: 8.1503 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1e-05 | 12 | 34 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ C+k F+ +s+Lk+H +H EMT09031 12 CQeeGCKKAFKYPSQLKKHEESH 34 77779**************9988 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.7e-05 | 101 | 125 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL+ H++ H EMT09031 101 KCSfdGCECSFSNKSNLNMHMKAcH 125 799999****************955 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.245 | 10 | 35 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.039 | 10 | 34 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 12 | 34 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-6 | 12 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5 | 42 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 18 | 70 | 91 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.3E-6 | 85 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.53E-9 | 85 | 142 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 100 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0027 | 100 | 125 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 102 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 124 | 153 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.2 | 131 | 157 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.642 | 131 | 157 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 133 | 157 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MDDTKSNQQV ICQEEGCKKA FKYPSQLKKH EESHAKLDYV EVVCCEPGCL KTFTNAKCLR 60 AHNQSCHLYT QCDICGEKHL RKNIKRHLRA HHKVHSTERL KCSFDGCECS FSNKSNLNMH 120 MKACHDQVRP FECRVAGCGK TFPYKHVRDN HEKSSCHVYV EGDYEEMDEQ LRSRPRGGRK 180 RAAVTVETLT RKRVTIPSEA SSLEDGAEYM RWMLSDGDGS NHAE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK374527 | 0.0 | AK374527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068C12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181263.1 | 1e-166 | transcription factor IIIA-like | ||||
Swissprot | Q84MZ4 | 1e-75 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | M8B4V8 | 1e-167 | M8B4V8_AEGTA; Transcription factor IIIA | ||||
STRING | EMT09031 | 1e-168 | (Aegilops tauschii) | ||||
STRING | Traes_6DS_2B2F9C290.2 | 1e-160 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2382 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72050.1 | 7e-79 | transcription factor IIIA |