PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT08998

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HSF

Protein Properties

Length: 480aa MW: 52875.7 Da PI: 4.81

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT08998	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	74.7	1.7e-23	43	101	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d+++++++sws+ +nsfvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+Y EMT08998 43 FLTKTYDMVDDPNTDSIMSWSAGNNSFVVWDPHAFATVLLPRQFKHSNFSSFVRQLNTY 101 9*********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	9.5E-45	39	200	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.84E-22	39	101	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.7E-34	39	109	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.1E-12	43	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.4E-25	43	200	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-12	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-12	94	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.26E-5	164	200	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.7E-34	168	200	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MDPVPSLVKE EEEEGAHGTG DSPAVGAAPR PMEGLHDAGP PPFLTKTYDM VDDPNTDSIM 60 SWSAGNNSFV VWDPHAFATV LLPRQFKHSN FSSFVRQLNT YLAAVTAWSW PLPGGLGQTT 120 IYSMFPGDLL RATYGNVVNL KIFNLKICRL SISELLMGAG VMSKFTYHQG FRKVDPDRWE 180 FANEGFLRGQ RHLLKNIRRR KPPAHTASNQ QSLGSYLEVG HFGYDAEIDR LKRDKQLLMA 240 EVVKLRQEQQ NTKARLKAME DRLCGTEQKQ QQMTSFMARI LRNPEFLKQL IAKNGMRKEL 300 HDAISKKRRR RIDGGPEAYA MGASSSSLDQ ELPVVFDSHG SVELLAEGSV PVELLSDGIP 360 PDLEGSVDLL GDEIPPGLEG SVALLADGLE GSVELLVDGI PSDLDAGIDS NGVTEPQDYG 420 LGTCEAQQNR APGLFHDNFW EELLNKGLSV ENDEPVNVDG MDVLSEKMGY LIPNSPTLST

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MDPVPSLVKE EEEEGAHGTG DSPAVGAAPR PMEGLHDAGP PPFLTKTYDM VDDPNTDSIM  60
SWSAGNNSFV VWDPHAFATV LLPRQFKHSN FSSFVRQLNT YLAAVTAWSW PLPGGLGQTT  120
IYSMFPGDLL RATYGNVVNL KIFNLKICRL SISELLMGAG VMSKFTYHQG FRKVDPDRWE  180
FANEGFLRGQ RHLLKNIRRR KPPAHTASNQ QSLGSYLEVG HFGYDAEIDR LKRDKQLLMA  240
EVVKLRQEQQ NTKARLKAME DRLCGTEQKQ QQMTSFMARI LRNPEFLKQL IAKNGMRKEL  300
HDAISKKRRR RIDGGPEAYA MGASSSSLDQ ELPVVFDSHG SVELLAEGSV PVELLSDGIP  360
PDLEGSVDLL GDEIPPGLEG SVALLADGLE GSVELLVDGI PSDLDAGIDS NGVTEPQDYG  420
LGTCEAQQNR APGLFHDNFW EELLNKGLSV ENDEPVNVDG MDVLSEKMGY LIPNSPTLST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-16	38	101	21	87	Heat shock factor protein 1
5d5v_B	9e-16	38	101	21	87	Heat shock factor protein 1
5d5v_D	9e-16	38	101	21	87	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	310	KKRRRR
2	306	311	KRRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208544	0.0	KF208544.1 Triticum aestivum heat shock factor A2b (HsfA2b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146162.1	0.0	heat stress transcription factor A-2b-like
Swissprot	Q6VBB2	1e-119	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	M8C1D1	0.0	M8C1D1_AEGTA; Heat stress transcription factor A-2b
STRING	EMT08998	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-51	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]