PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT08963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | CO-like | ||||||||
Protein Properties | Length: 396aa MW: 43609.4 Da PI: 4.6906 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.5 | 4.1e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ EMT08963 4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 6******99*********************657888889876 PP | |||||||
2 | zf-B_box | 25.9 | 2.1e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C + ++ lC++C ++H+ H++++ EMT08963 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgssaagHKRQN 89 7*****************************6688899998876 PP | |||||||
3 | CCT | 62.6 | 1.2e-21 | 340 | 383 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k+RkF+ kirYesRKa+A+ R+RvKGrFvk+ EMT08963 340 RDSAITRYKEKKKRRKFDHKIRYESRKARADVRKRVKGRFVKAG 383 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.8E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.869 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.50E-8 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.286 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-5 | 47 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.02E-5 | 47 | 88 | No hit | No description |
SMART | SM00336 | 0.091 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 9.0E-17 | 340 | 382 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.971 | 340 | 382 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60 LEENTSLCQN CDWNGHSAGS SAAGHKRQNI NCYSGCPSSA ELSRMWSFIL DIPNVAPELN 120 CEQVISMMSI SDSAVSNGDN AQGDNSLVDM ACATLDEEDK QKSVIGSSSE AALNLLPPAN 180 NQTAVSVDST TAKYTPDKHM FSKDSIYEDF SMDDIDLSYE NYEELFGNSH IQTEELFDDA 240 GIDSYFEPKE ATAVNSDEQP KPKQPAASNA LSADSGMSNP AVKEDDSSLC IPVRQAISYS 300 GFTGESIPEE YQDCGVSPML LMGEPPWLPP GPDGSFAGIR DSAITRYKEK KKRRKFDHKI 360 RYESRKARAD VRKRVKGRFV KAGEAYDYDP LDTRSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 349 | 353 | KKKRR |
2 | 349 | 354 | KKKRRK |
3 | 350 | 354 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK253130 | 0.0 | AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150634.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-119 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A3B6TPJ3 | 0.0 | A0A3B6TPJ3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453RCY6 | 0.0 | A0A453RCY6_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8C190 | 0.0 | M8C190_AEGTA; Zinc finger protein CONSTANS-LIKE 9 | ||||
STRING | EMT08963 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_7DS_9B463F375.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 2e-96 | CONSTANS-like 9 |