PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT08830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18382.8 Da PI: 9.6062 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H +H EMT08830 58 FVCKTCGRAFETFQALGGHRTSH 80 89*********999998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.492 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-7 | 58 | 130 | No hit | No description |
SMART | SM00355 | 0.42 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.3E-10 | 58 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.39 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.1E-9 | 108 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKRAREEEPV VSLALSLRTD SSATSTTTSD SSTGAPALVP RKRARRGRAV ATSGEGEFVC 60 KTCGRAFETF QALGGHRTSH LRGRHGLELG VGVARAIKQR KRQEEKQHDC LICGLGFETG 120 QALGGHMRRH REEMALSDAM DRWVALSDQE AGHQHAADRP PVLLELFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369683 | 1e-133 | AK369683.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095K21. | |||
GenBank | AK372198 | 1e-133 | AK372198.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P16. | |||
GenBank | EU812563 | 1e-133 | EU812563.1 Hordeum vulgare subsp. vulgare Rpg4 gene, complete sequence; RGA1 (RGA1) gene, complete cds; Rpg5 gene, complete sequence; PP2C (PP2C) gene, complete cds; and ADF3 gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198415.1 | 1e-119 | zinc finger protein ZAT6-like | ||||
TrEMBL | A0A453M9J4 | 1e-117 | A0A453M9J4_AEGTS; Uncharacterized protein | ||||
STRING | EMT08830 | 1e-118 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 1e-20 | C2H2 family protein |