PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08335
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 287aa    MW: 31380.3 Da    PI: 6.5001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08335genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.8e-141560144
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrw 44
                     +g+WT+eEd+ lv+++++ Gg+  +W+  ++  g++R++k+c++rw
         EMT08335 15 KGPWTEEEDKTLVEYIQKRGGNvgSWRGLPKAAGLNRCGKSCRLRW 60
                     79******************************************** PP
2Myb_DNA-binding27.57.3e-0959822347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+tIa ++  gRt++++k++w+++
         EMT08335 59 RWSTIATHLE-GRTDNEIKNYWNTH 82
                     4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3031068IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-151360IPR009057Homeodomain-like
SMARTSM007171.3E-121485IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-161584IPR009057Homeodomain-like
PfamPF002494.4E-121561IPR001005SANT/Myb domain
CDDcd001674.88E-111783No hitNo description
Gene3DG3DSA:1.10.10.604.0E-126198IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRSPCCCQN SGVKKGPWTE EEDKTLVEYI QKRGGNVGSW RGLPKAAGLN RCGKSCRLRW  60
STIATHLEGR TDNEIKNYWN THIRKKLLRM GVDPVTHKQL PPDQSRHHLN ATSIAHHPEA  120
LLWAAAAASL GSMDTGALML AQLVQQFLQI IGSNNGTSGL IANLAAANAM LNSRGSMVPN  180
LQLQDQMNYL QLGYLCNTSN FTDQHVVQQQ LTNDTSPGTS SFAAGQEADQ LCNTAATFAS  240
HDVAPAGDWS PAKEFAGLME PTMELPDLCS LESDSFWKDI LEDSYHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5157255e-57AF515725.1 Lolium perenne R2R3 MYB protein MYB3 (MYB3) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169243.10.0transcription factor RAX1-like
TrEMBLM8B4080.0M8B408_AEGTA; Transcription factor MYB39
STRINGEMT083350.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-46myb domain protein 9