PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT08262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HB-other | ||||||||
Protein Properties | Length: 536aa MW: 58367.2 Da PI: 6.3702 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5.2e-20 | 95 | 150 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R++ k EMT08262 95 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRSLSLEPLQVKFWFQNKRTQIK 150 688999**********************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-23 | 74 | 150 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.38E-19 | 83 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 92 | 152 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-18 | 93 | 156 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.16E-19 | 95 | 153 | No hit | No description |
Pfam | PF00046 | 1.5E-17 | 95 | 150 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 127 | 150 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 2.75E-16 | 226 | 413 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MQNLMDGMHH HQLPAMLQHQ MVDHHLLPQH HHHPHQQAAT SESDARGPHG GGNNNSSNNN 60 EELEMSKSGT GSDNNLDGGE DDEQEDPTGQ HPRKKKRYHR HTQHQIQELE AFFKECPHPD 120 DKQRKELSRS LSLEPLQVKF WFQNKRTQIK TQHERQENTA LRTENEKLRA ENMRYKEALA 180 NASCPNCGGP AAIGEMSFDE HHLRVENARL RDEIDRISAT AGTGAEDVRV MTRKSVDDPG 240 RPPGIILNAA TSFWLPVPPS RVFGFLRDDS TRSEWDILSN GGGVQEMAHI ANGSHHGNAV 300 SLLRVNNANS NQSNMLILQE CCTDTTGSYV VYAPVDVVAM NVVLNGGDPD YVALLPSGFA 360 TLPEGPAGAP DAGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIACTVD RIKAAVVVSP 420 GDNTGAAANR RSRGTKSGSG ENQIPEKQPT YSSHPKKLVP QMDVSSIKLV LDTSICGTSL 480 GQVFSDGAVK VVNDLFPGFC SKNISGKYDK EKEGLFVIVN DLDIKMESLG LLNSAF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249246 | 0.0 | AK249246.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887377.1 | 0.0 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like | ||||
Swissprot | A3BPF2 | 1e-111 | ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7 | ||||
TrEMBL | M8AUY8 | 0.0 | M8AUY8_AEGTA; Homeobox-leucine zipper protein ROC7 | ||||
STRING | EMT08262 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25159 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 1e-101 | homeodomain GLABROUS 2 |