PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08262
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HB-other
Protein Properties Length: 536aa    MW: 58367.2 Da    PI: 6.3702
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08262genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.2e-2095150156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t++q++eLe++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R++ k
  EMT08262  95 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRSLSLEPLQVKFWFQNKRTQIK 150
               688999**********************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-2374150IPR009057Homeodomain-like
SuperFamilySSF466891.38E-1983152IPR009057Homeodomain-like
PROSITE profilePS5007117.00692152IPR001356Homeobox domain
SMARTSM003892.9E-1893156IPR001356Homeobox domain
CDDcd000865.16E-1995153No hitNo description
PfamPF000461.5E-1795150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
SuperFamilySSF559612.75E-16226413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MQNLMDGMHH HQLPAMLQHQ MVDHHLLPQH HHHPHQQAAT SESDARGPHG GGNNNSSNNN  60
EELEMSKSGT GSDNNLDGGE DDEQEDPTGQ HPRKKKRYHR HTQHQIQELE AFFKECPHPD  120
DKQRKELSRS LSLEPLQVKF WFQNKRTQIK TQHERQENTA LRTENEKLRA ENMRYKEALA  180
NASCPNCGGP AAIGEMSFDE HHLRVENARL RDEIDRISAT AGTGAEDVRV MTRKSVDDPG  240
RPPGIILNAA TSFWLPVPPS RVFGFLRDDS TRSEWDILSN GGGVQEMAHI ANGSHHGNAV  300
SLLRVNNANS NQSNMLILQE CCTDTTGSYV VYAPVDVVAM NVVLNGGDPD YVALLPSGFA  360
TLPEGPAGAP DAGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIACTVD RIKAAVVVSP  420
GDNTGAAANR RSRGTKSGSG ENQIPEKQPT YSSHPKKLVP QMDVSSIKLV LDTSICGTSL  480
GQVFSDGAVK VVNDLFPGFC SKNISGKYDK EKEGLFVIVN DLDIKMESLG LLNSAF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2492460.0AK249246.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887377.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
SwissprotA3BPF21e-111ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLM8AUY80.0M8AUY8_AEGTA; Homeobox-leucine zipper protein ROC7
STRINGEMT082620.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2515933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.41e-101homeodomain GLABROUS 2