PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT08035

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

HSF

Protein Properties

Length: 458aa MW: 49701.8 Da PI: 4.922

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT08035	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.9	1.6e-33	20	111	2	101
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+ye+++d++++ ++sws ++ +sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF +++F kg+k+ll++i EMT08035 20 FLLKTYEMVDDPATDAVVSWSdASDTSFVVWNSPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFGNEYFVKGQKHLLKNI 107 9******************76679************************************999.........*************** PP XXXX CS HSF_DNA-bind 98 krkk 101 r+k EMT08035 108 YRRK 111 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.24E-32	16	110	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.3E-35	16	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.6E-57	16	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.0E-29	20	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	60	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MEGSGAAGAR GGGGGGPAPF LLKTYEMVDD PATDAVVSWS DASDTSFVVW NSPEFAARLL 60 PAYFKHSNFS SFIRQLNTYG FRKIDPERWE FGNEYFVKGQ KHLLKNIYRR KPIHSHSHQP 120 GALPDNERSF FEDEIDRLAR EKANLQAELW KSKQQESGTM FQIEALERRA VDMEQRQGKM 180 IAFLQQASKN PHFVGKLVKM AEASSMFADA LHKKRRLSGL DYAVEATETA SFCDDHSATS 240 RQEMGNLLNQ HFSDKLKLGL CSAATESNLV TLSTQSSHED NCSPHGRHPP GHDGMGTGGL 300 PLVPQMMELS DTGTSICPSK SSFFTPAVND EGLSPCHLSL TLASCSMDVD RGQASNADGG 360 TTGDEGSDNP PEATATAFGG NQRASVDAGT AEALTGGEDT RVAAEPAAPV KANDNFWEQF 420 LTERPGDASS GPRDPSMDKG QTEGGEKDDR EDTEQLKL

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MEGSGAAGAR GGGGGGPAPF LLKTYEMVDD PATDAVVSWS DASDTSFVVW NSPEFAARLL  60
PAYFKHSNFS SFIRQLNTYG FRKIDPERWE FGNEYFVKGQ KHLLKNIYRR KPIHSHSHQP  120
GALPDNERSF FEDEIDRLAR EKANLQAELW KSKQQESGTM FQIEALERRA VDMEQRQGKM  180
IAFLQQASKN PHFVGKLVKM AEASSMFADA LHKKRRLSGL DYAVEATETA SFCDDHSATS  240
RQEMGNLLNQ HFSDKLKLGL CSAATESNLV TLSTQSSHED NCSPHGRHPP GHDGMGTGGL  300
PLVPQMMELS DTGTSICPSK SSFFTPAVND EGLSPCHLSL TLASCSMDVD RGQASNADGG  360
TTGDEGSDNP PEATATAFGG NQRASVDAGT AEALTGGEDT RVAAEPAAPV KANDNFWEQF  420
LTERPGDASS GPRDPSMDKG QTEGGEKDDR EDTEQLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-22	11	110	17	129	Heat shock factor protein 1
5d5v_B	7e-22	11	110	17	129	Heat shock factor protein 1
5d5v_D	7e-22	11	110	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355564	0.0	AK355564.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022K17.
GenBank	AK357504	0.0	AK357504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200706.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	M8B336	0.0	M8B336_AEGTA; Heat stress transcription factor A-5
STRING	EMT08035	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-108	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]