PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT07957

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

TALE

Protein Properties

Length: 473aa MW: 50960.2 Da PI: 6.9186

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT07957	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	327	364	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps ++ LA+++gL+ +qV++WF N R + EMT07957 327 FEHflNPYPSDVDKHILARQTGLSRSQVSNWFINARVR 364 665569******************************88 PP
2	BELL	80.6	2e-26	189	257	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 el++ k +L +leeVd+rY++y+eq++ +++ Feavag +a Yt++A ++iSrhFr+L+d i+ q+ EMT07957 189 ELKRLKDRLYVMLEEVDRRYRRYCEQMRGLAGGFEAVAGERAASGYTAVAARTISRHFRSLRDGIVAQL 257 7788899***********************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-31	110	255	IPR006563	POX domain
Pfam	PF07526	4.0E-38	116	253	IPR006563	POX domain
PROSITE profile	PS50071	12.341	305	368	IPR001356	Homeobox domain
CDD	cd00086	1.01E-12	308	369	No hit	No description
SMART	SM00389	2.2E-8	308	372	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.88E-17	309	373	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-26	311	371	IPR009057	Homeodomain-like
Pfam	PF05920	5.3E-18	325	364	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MAHDPSLGFA DYFSAADAAA ASLMPQMDEG APELYGLQSG MELLGMRGLH AAAMSGAMSV 60 SADVHCDGGG DGHDGSTMRF FLEQQQQHEA SAASWMLPHE HEAATYAHGH GAAWPLRSSR 120 FLLPAQQLLP GYCSLPVDLT PQRGKQPPEP QQQQQQQQQQ DEAGGGEVSS SSTSGWTPSA 180 QIQAMEALEL KRLKDRLYVM LEEVDRRYRR YCEQMRGLAG GFEAVAGERA ASGYTAVAAR 240 TISRHFRSLR DGIVAQLQAV RKALGEKDVA PPGMTRGDTP RLKVLDQCIR QQKAMHQNGG 300 MMMDSHPWRP QRGLPERAVT ILRAWLFEHF LNPYPSDVDK HILARQTGLS RSQVSNWFIN 360 ARVRLWKPMG QGGFGGGAGG VSLTLGLQQH DTHGGVGGVN IAFGAPSSAQ HGAGGFLFPG 420 EQMDGVGLHP SGGHGQNIQF GMDGAAEGSS HGVQDQHYRA MSAGFHLLRD LAG

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MAHDPSLGFA DYFSAADAAA ASLMPQMDEG APELYGLQSG MELLGMRGLH AAAMSGAMSV  60
SADVHCDGGG DGHDGSTMRF FLEQQQQHEA SAASWMLPHE HEAATYAHGH GAAWPLRSSR  120
FLLPAQQLLP GYCSLPVDLT PQRGKQPPEP QQQQQQQQQQ DEAGGGEVSS SSTSGWTPSA  180
QIQAMEALEL KRLKDRLYVM LEEVDRRYRR YCEQMRGLAG GFEAVAGERA ASGYTAVAAR  240
TISRHFRSLR DGIVAQLQAV RKALGEKDVA PPGMTRGDTP RLKVLDQCIR QQKAMHQNGG  300
MMMDSHPWRP QRGLPERAVT ILRAWLFEHF LNPYPSDVDK HILARQTGLS RSQVSNWFIN  360
ARVRLWKPMG QGGFGGGAGG VSLTLGLQQH DTHGGVGGVN IAFGAPSSAQ HGAGGFLFPG  420
EQMDGVGLHP SGGHGQNIQF GMDGAAEGSS HGVQDQHYRA MSAGFHLLRD LAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-15	314	369	1	56	Homeobox protein Meis1
4xrs_B	3e-15	314	369	1	56	Homeobox protein Meis1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367800	0.0	AK367800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062I16.
GenBank	AK372185	0.0	AK372185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147N13.
GenBank	AK373089	0.0	AK373089.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3020M01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184600.1	0.0	homeobox protein BEL1 homolog
Refseq	XP_020184605.1	0.0	homeobox protein BEL1 homolog
Refseq	XP_020184610.1	0.0	homeobox protein BEL1 homolog
Refseq	XP_020184619.1	0.0	homeobox protein BEL1 homolog
Swissprot	Q94KL5	6e-77	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	M8AU03	0.0	M8AU03_AEGTA; BEL1-like homeodomain protein 4
STRING	EMT07957	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3814	37	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	9e-78	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]