PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT07955 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | TALE | ||||||||
Protein Properties | Length: 162aa MW: 18796.4 Da PI: 8.9412 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.8 | 3.7e-08 | 112 | 145 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + EMT07955 112 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 145 579*****************************87 PP | |||||||
2 | ELK | 28.9 | 2.5e-10 | 66 | 87 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++g++++E++ EMT07955 66 ELKIELKQGFKSRIGDVREEIL 87 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 8.9E-7 | 66 | 87 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.289 | 66 | 86 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0049 | 66 | 87 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 86 | 149 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-16 | 88 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.2E-10 | 88 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.00E-11 | 89 | 150 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 93 | 152 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 106 | 145 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007155 | Biological Process | cell adhesion | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045010 | Biological Process | actin nucleation | ||||
GO:0045492 | Biological Process | xylan biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0071555 | Biological Process | cell wall organization | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MWMYGSGASL EEGMGATMSE DEDEGPPMIM EAAPMDMSSN GHDMMGFGPL VPTDTERSLM 60 ERVRQELKIE LKQGFKSRIG DVREEILRKR RAGKLPGDTT TILKQWWQEH AKWPYPTEDD 120 KAKLVEETGL QLKQINNWFI NQRKRNWHNN SQTSTLKSKR KR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 161 | RKRNWHNNSQTSTLKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369536 | 0.0 | AK369536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2093A15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184577.1 | 1e-113 | homeobox protein knotted-1-like 3 | ||||
Swissprot | Q94LW3 | 4e-99 | KNOS3_ORYSJ; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | M8B2X1 | 1e-116 | M8B2X1_AEGTA; Homeobox protein knotted-1-like protein 3 | ||||
STRING | EMT07955 | 1e-117 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 2e-87 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |