PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT07892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 694aa MW: 76931.3 Da PI: 4.5946 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.7e-52 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 lp GfrFhPtdeelv +yLk k++g+ ++ evi+e+d++k+ePwdLp k +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk EMT07892 9 LPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPdKaLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSKgekk 109 699***********************988889***************96336677888**************************************97655 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +g+kktLvf++grapkge+t W+mheyr EMT07892 110 KQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 5556***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.992 | 9 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL 60 IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQLEKTER SIPEEMDRSG 180 YSPTPSRSTP DNMEANEEAI TLINKEFPES GLHGCPIELP GTIDTPGTPV TRWLADRNGN 240 SGIDEANVLG MPFHGNVDES PKADMPVGSL AHLIDSQTKN LGSHEFATVS APMLSLDDVD 300 KLLLQLPHNS VEDFLNETIA DPDEHSSTAC KVQYDSDTVF MQAQGELLYD GPNWFGNFLS 360 DDTNPQQSGL YENATLLPYG TNPDVLSMDS GDESLQDLFN SMDDSSGQND VWSNGFGFNP 420 MHQQLQSTVH PNYIFSQQGI APRRLRLLDS LSDVNVESRE SMTRDEHEDE ESDIVTSKYT 480 SESVESSADV DDSESTGVTI MTRRRALTKS APSDCDDAQS TGITIMARRP APSSNMPSNE 540 ADAEATGINI MSTSTDSSFT TEQGTAVRRL RLQSNLDAGS CSSVDGASSC IIKHGSENKG 600 LEAEIEEHVD TNFPDDAGNS HADEQMYMPD HEANSGMRLR KTAEKSDKEN KQECGLQPHV 660 RAPRKRGGFA ARMILPVLSV ALLVLVSVGI YGWA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-46 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 8 | 164 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 8 | 164 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-46 | 8 | 164 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 8 | 164 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249749 | 0.0 | AK249749.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54a18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181256.1 | 0.0 | protein NTM1-like 9 isoform X2 | ||||
TrEMBL | A0A3B6TK80 | 0.0 | A0A3B6TK80_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453RX52 | 0.0 | A0A453RX52_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8ATU2 | 0.0 | M8ATU2_AEGTA; NAC domain-containing protein 78 | ||||
STRING | EMT07892 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 9e-70 | NAC 014 |