PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07635
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 848aa    MW: 96637.6 Da    PI: 7.8371
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07635genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind74.22.3e-231969102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT...........TEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY...........gFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   +++d+++++++sw++ gnsfv++d + f++++L+++Fkh+nf+SF+RQLn+Y           gF+kv+         ++ we++++ F +++k+ll
      EMT07635   1 MVSDAATDKVMSWTDAGNSFVIWDAHAFERDLLSRHFKHRNFSSFIRQLNTYvrlprpprlfpGFRKVD---------PDRWEWANEGFLRDQKHLL 88 
                   8999************************************************43333333333333333.........667**************** PP

                   XXXXXXXX CS
  HSF_DNA-bind  95 ekikrkks 102
                   + ikrkk+
      EMT07635  89 KIIKRKKR 96 
                   *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-34194IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-27194IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-24194IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-22194IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF077625.5E-12502644IPR011676Domain of unknown function DUF1618
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MVSDAATDKV MSWTDAGNSF VIWDAHAFER DLLSRHFKHR NFSSFIRQLN TYVRLPRPPR  60
LFPGFRKVDP DRWEWANEGF LRDQKHLLKI IKRKKRPQEA GRELEKAPVK AAPGTENIEI  120
GRYGGLVKEV ETLKRDKALL MKQLVDLRLY QQSSNLEVQS LIQRLQVMEQ NQKQMMALLA  180
IVVQNPSLLN QLVQQQQQQR RNNCVYEDGN KKRRFPALEQ GPVTDHETSG SGAEIIQYRP  240
PVPETSSQVI ADEAFLSATA QPISSAALNM PMDIDTQTTL GNLNTQGSSG DIFADMPALP  300
DFEDMHLWFS EDGEPTLTIQ DYDEFPQSGQ DCQMEAQHNY NNPQHVFYVT VYWKLVLDSR  360
TSITPDSSVW DTPRPNGSFD KHVRRRSATH HRGNVQRAAL PRVQGRPRES VARGAPAPTH  420
QIPFDQRGRH PQPWRRIRRG GIGTESQSRP SCLRALPLLV HDQGMEQQGD PTGRCYRGDD  480
LRHVLNHRTT KVITVGVDSL GWVDLWRGIL LCNVLDESPV VRYLSFPRPM PGNSRHVGTS  540
SSRPFRDVIC VGDKFRFIEV EYHQDAESDD DDVTDYGWRA TSMERTIASD WNTCSSVDTG  600
DIVLAGQSWD LVSHRVWDDD EQRLSLRKFE CFSPTLGMDD DIFYMMTRPL GSNDKPLGLF  660
AALDMRNMDM RLVSFSTERM SYIDPNYCPC VVSRYFNNTS VAHILCLISF FRVQKVAGKN  720
TTGENLRWIG LVKLTPGYSC CHSDAHVIRD FSLLGAKSLP VTDKDECKIV DTICTNIAPV  780
IALARSLVKA LLPKRLADPL YSLQSVDRTL QYGELPLTQY LRRLARQSVA LKRFAMWELS  840
PKGMQYEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1419436129Heat shock factor protein 1
5d5v_B2e-1419436129Heat shock factor protein 1
5d5v_D2e-1419436129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4460320.0HM446032.1 Hordeum vulgare subsp. vulgare heat shock factor A9 (HsfA9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8B2150.0M8B215_AEGTA; Heat stress transcription factor A-9
STRINGEMT076350.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-45heat shock transcription factor A1D