PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT07531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 926aa MW: 102986 Da PI: 8.5368 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.5e-08 | 394 | 438 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q EMT07531 394 KAWTACEEKRLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 438 58*****************************99**********96 PP | |||||||
2 | Myb_DNA-binding | 41.8 | 2.6e-13 | 447 | 491 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l+ av+ +G + W ++++ + gR ++qc +r++k l EMT07531 447 RTWTKEEDLQLLAAVQTFGCN-WQLVSANLV-GRIGNQCSNRYRKTL 491 68*****************88.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 43.7 | 6.3e-14 | 499 | 544 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l vk++ +g+W++Ia+ ++ gRt qc +rw+++l EMT07531 499 GRWSEDEDKRLMVSVKLFRSGSWNKIAQFVP-GRTQSQCSERWRNVL 544 8******************************.************986 PP | |||||||
4 | Myb_DNA-binding | 33.7 | 8.2e-11 | 551 | 594 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G+ W++Ia m +Rt+++c rw EMT07531 551 GEWRPEEDSKLLASVHEVGPC-WSKIAGAMIPHRTDNMCLRRWKR 594 79*****************88.*****99999***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.808 | 289 | 387 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-5 | 291 | 312 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.21 | 293 | 389 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-5 | 359 | 374 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.97E-15 | 368 | 436 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-6 | 375 | 407 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.072 | 388 | 440 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.9E-4 | 392 | 442 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-6 | 394 | 438 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-11 | 408 | 445 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.8E-19 | 426 | 491 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.246 | 441 | 495 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-12 | 445 | 493 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-15 | 446 | 491 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-12 | 447 | 490 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.45E-9 | 448 | 491 | No hit | No description |
PROSITE profile | PS50090 | 10.557 | 493 | 544 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 494 | 547 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-24 | 495 | 592 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 497 | 546 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-10 | 500 | 544 | No hit | No description |
Pfam | PF13921 | 4.4E-14 | 501 | 561 | No hit | No description |
PROSITE profile | PS51294 | 17.042 | 545 | 600 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-15 | 548 | 599 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-10 | 549 | 598 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.94E-9 | 552 | 595 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 926 aa Download sequence Send to blast |
MDFYSDDDSD PDFDEGLQED LDLVRRSCII AGADPDAAVA QASSYLTVPA ATTTAAAAAA 60 KATDGSSDEG EGEDEDEDLA LVRSIRENLH LNKASPSSPR PICAWPPSDA EDDEEDDLET 120 LRAIQRRFSH YHSGTSTGPL ENMKNEASKG GDDEFIAHQP GEEDVQKKNM NANTQTGFPK 180 AALLLVDALK KNRACQKFIR RKMINIEAKI EVNKDLRDRV KCLMDYQYSC RRSFGKVLCQ 240 KVDPRVRLIS SQKQSAQSAK NKYKTPALLL GPAENPHVEK YKAVLKQFPV SLQKHPWSDI 300 EKDRLAKGIK QQYQEALIKD SMKNGSSSGD FSAVDMAYAL TNTVGNFEAT PEILRSVLPL 360 VNWDYVAAMY LPGRSGAECE SRWLNHDDPL INHKAWTACE EKRLILTVQE KGMHNWINIA 420 VALGTQRTPF QCLARYQRSL NPHILKRTWT KEEDLQLLAA VQTFGCNWQL VSANLVGRIG 480 NQCSNRYRKT LIPERKRVGR WSEDEDKRLM VSVKLFRSGS WNKIAQFVPG RTQSQCSERW 540 RNVLDPDIEH GEWRPEEDSK LLASVHEVGP CWSKIAGAMI PHRTDNMCLR RWKRLCQDEL 600 PLMIAANQVK KSIFQTNFVD RETERPAICP SDFPSLVYSK VDKGDENTVR IGAENQTGED 660 ITVSDGVNNS SRCHHSKARK RKVTTDGDVV VQPGMRGSIS VDKELTLDIL GGPISFDNEA 720 PTNQKRDPTS VGKEGTAKKR TRGSVSVGNE GAVKKKMRGS ISVGDGRAVK NRMRGSVSID 780 NQGNTTKRKR VSRKSAKGNS KTDGEVNTCE MDLPSVPSEA AAERGIHTGN TNKMKRKSTP 840 RPKLINMAEG TVDEYSRLAD CISFARGNGT SKNNSVMPIN NAVQSGGPSG ENLQMTIIDR 900 SNFLKLEKQE DRGAKVLIEH LNSSIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-22 | 366 | 617 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-22 | 366 | 617 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 736 | 742 | AKKRTRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368554 | 0.0 | AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150877.1 | 0.0 | uncharacterized protein LOC109736068 | ||||
TrEMBL | M8B0J4 | 0.0 | M8B0J4_AEGTA; Myb-like protein L | ||||
STRING | EMT07531 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-143 | myb domain protein 4r1 |