PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07474
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 312aa    MW: 34554.9 Da    PI: 6.6218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07474genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+ Ed+ l+++++ +G g+W++ ++   + R++k+c++rw +yl
         EMT07474 14 RGRWTAKEDDTLAKYIAGHGEGSWRSLPKNAELLRCGKSCRLRWVNYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding56.65.8e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eEd+l+v++++ lG++ W++Ia++++ gRt++++k++w+ +
         EMT07474  67 RGNFSKEEDDLIVKLHAALGNR-WSLIASYLP-GRTDNEIKNYWNAH 111
                      89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.356961IPR017930Myb domain
SuperFamilySSF466893.99E-2811108IPR009057Homeodomain-like
SMARTSM007172.2E-91363IPR001005SANT/Myb domain
PfamPF002494.6E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-191568IPR009057Homeodomain-like
CDDcd001677.85E-81661No hitNo description
PROSITE profilePS5129426.06962116IPR017930Myb domain
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002492.4E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2569116IPR009057Homeodomain-like
CDDcd001672.60E-1369112No hitNo description
PfamPF066405.9E-5130159IPR010588Myb-related protein P, C-terminal
PfamPF066401.0E-5200300IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAK EDDTLAKYIA GHGEGSWRSL PKNAELLRCG KSCRLRWVNY  60
LRDGVRRGNF SKEEDDLIVK LHAALGNRWS LIASYLPGRT DNEIKNYWNA HLSRQIHSFR  120
HTYTAGKETT ITIDMNKLSA ASKRRGGRAP RSSTKKQPVL EPTKSMECSR PVGDISSSTS  180
SLPQGNSETM LDQNQPINII TNDTPCSEEP MVMDPIDLNG GVLEPNYANN SMDQIGILQE  240
CGEIEAMLSS IDDMPASVLT SIEHGGHSPR VEDLLDMEWE GFASLLCDLP AQNDRLQESG  300
AAGNERLRVG RA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23121165108B-MYB
1h8a_C7e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189728.10.0myb-related protein P-like
SwissprotP278987e-79MYBP_MAIZE; Myb-related protein P
TrEMBLM8BL240.0M8BL24_AEGTA; Myb-related protein P
STRINGEMT074740.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-68myb domain protein 12
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]