PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT07419 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24230.9 Da PI: 4.1182 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.2 | 4.1e-08 | 31 | 57 | 29 | 55 |
AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55 r++lg++ +aeeAa+a++ + +++g EMT07419 31 VRVWLGTYNSAEEAARAYDVEAHRIRG 57 79*********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.959 | 8 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-11 | 12 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-11 | 28 | 66 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-16 | 29 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.70E-16 | 29 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MCSAATATDD GLLKGRERTS SGGSAAALTG VRVWLGTYNS AEEAARAYDV EAHRIRGKKA 60 KVNFPEEAPM APQQRCATSA KVPEFNTEQK PPQNMSFVPT VNAVEAPFMN FSSDQGSNSF 120 SCSDFSWKND IKTPGITSVL ASIPTSTEVN ESTFLQNNGI NSTVPPVMGD ANVDLADLEP 180 YMKFLMDDGS EQSIDSILSC DVPQDVVGNM DLWSFDDMPL SAGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ689812 | 0.0 | KJ689812.1 Triticum turgidum subsp. durum ethylene response factor 1 (ERF1) gene, complete cds. | |||
GenBank | KJ689813 | 0.0 | KJ689813.1 Triticum turgidum subsp. durum ethylene response factor 1 short form P (ERF1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183034.1 | 1e-130 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 4e-72 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M8BKX7 | 1e-166 | M8BKX7_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT07419 | 1e-167 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 3e-18 | ERF family protein |