PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT07151

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NAC

Protein Properties

Length: 411aa MW: 44339.7 Da PI: 6.6739

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT07151	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	3.9e-49	46	171	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++++ +gl EMT07151 46 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGENSRPIGL 145 79*************************.89***********7777899******************************************* PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 kktLvfy+g+apkg++++W+m+eyrl EMT07151 146 KKTLVFYSGKAPKGVRSSWIMNEYRL 171 **********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-54	45	215	IPR003441	NAC domain
PROSITE profile	PS51005	53.535	45	216	IPR003441	NAC domain
Pfam	PF02365	1.7E-24	47	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MSRDVDEGSV SAATAGAGGG GEVGGEAAAG VSDEAAVDSH ENDLVMPGFR FHPTEEELIE 60 FYLRRKVEGR RFNVELITFL DLYRFDPWEL PAMAVIGEKE WFFYVPRDRK YRNGDRPNRV 120 TASGYWKATG ADRMIRGENS RPIGLKKTLV FYSGKAPKGV RSSWIMNEYR LPPPTTDADL 180 FYKGGFDRAC LCSLSEVSQN VSCMQSEISL CRVYKRSGID DGHGRPSSSN VQASSSARPG 240 TSRTIIPPAG QQVSSPLSTP MSPTQQPSFH GILGQGECSP APLPAIMDQA TAQLHQPPPP 300 PPPRPSAFAS AMSSTMSVAP AARSCTYSLM ALADAPMMGS SSTPGDELSR LVGHSQAYPN 360 HPAVGSHFLP SPSSSQIPPH GEMPVSPADK LWDWIHPDTT GSRDYGSSSF K

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MSRDVDEGSV SAATAGAGGG GEVGGEAAAG VSDEAAVDSH ENDLVMPGFR FHPTEEELIE  60
FYLRRKVEGR RFNVELITFL DLYRFDPWEL PAMAVIGEKE WFFYVPRDRK YRNGDRPNRV  120
TASGYWKATG ADRMIRGENS RPIGLKKTLV FYSGKAPKGV RSSWIMNEYR LPPPTTDADL  180
FYKGGFDRAC LCSLSEVSQN VSCMQSEISL CRVYKRSGID DGHGRPSSSN VQASSSARPG  240
TSRTIIPPAG QQVSSPLSTP MSPTQQPSFH GILGQGECSP APLPAIMDQA TAQLHQPPPP  300
PPPRPSAFAS AMSSTMSVAP AARSCTYSLM ALADAPMMGS SSTPGDELSR LVGHSQAYPN  360
HPAVGSHFLP SPSSSQIPPH GEMPVSPADK LWDWIHPDTT GSRDYGSSSF K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-53	47	217	19	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-53	47	217	19	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-53	47	217	19	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-53	47	217	19	166	NO APICAL MERISTEM PROTEIN
4dul_A	4e-53	47	217	19	166	NAC domain-containing protein 19
4dul_B	4e-53	47	217	19	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183242.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9ZVP8	3e-92	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	M8AZH8	0.0	M8AZH8_AEGTA; Putative NAC domain-containing protein 94
STRING	EMT07151	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	2e-92	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]