PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07028
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 1334aa    MW: 150139 Da    PI: 8.0565
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07028genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.71.8e-13396413331373
      GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99  
                l++lL++cA+av+++d+++++ ++ +l++++s +gdp qRl ay++e+L arla+s++++ykal+++e +   ss+ ++++++++e++P++kf+++ aN
  EMT07028  964 LKKLLISCARAVEAKDMSAVDMMVPELRKMVSVSGDPHQRLGAYIVEGLVARLASSGHSIYKALKCKEPR---SSDLMSYMHFLYEACPYFKFGYMSAN 1059
                5799*****************************************************************9...999*********************** PP

      GRAS  100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 
                 aI eav+ge+++HiiDf+isqG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   l  +g+rL+++A  ++vpfef+  va + ++++  +L v
  EMT07028 1060 GAIAEAVKGEDMIHIIDFGISQGAQWVPLLQALATRPGGPPTVRITGIDDSLSAyaRGGGLDLVGRRLSHIAGLCKVPFEFHS-VAVAGDEVKEGHLMV 1157
                **************************************************877788999************************.7999*********** PP

      GRAS  197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 
                 pgEalaVn+ l+lh+++de vs++++rd++L+lvkslsPkvv++veqe+++n+ +F +rf+e+l+yy+a+f+s++ +lpr+++eri++E+++l+reiv
  EMT07028 1158 IPGEALAVNFTLELHHIPDEAVSTANHRDRILRLVKSLSPKVVTLVEQELNTNTVPFKQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIV 1256
                *************************************************************************************************** PP

      GRAS  296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                n+vacegaer+erhe ++kW+ rl+++GF+p pls+ +++++++ll+ ++ + y++ e++g l+lgWk++pLv+ SaW
  EMT07028 1257 NIVACEGAERVERHEVFGKWKGRLMMVGFRPCPLSSLVNATIRTLLQSYSAN-YQLAERDGVLYLGWKNKPLVVSSAW 1333
                **************************************************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.105.6E-10260276IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525404.79E-25317463IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.3E-19321441IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3003.7E-11327440IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003645.5E-5338353No hitNo description
PRINTSPR003645.5E-5410424No hitNo description
SuperFamilySSF520582.21E-21528903IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.6E-10562747IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.6E-10783875IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5098568.8269381315IPR005202Transcription factor GRAS
PfamPF035146.1E-1319641333IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1334 aa     Download sequence    Send to blast
METGTSILAL KRKGEEWSSA LQERGPKHSF FLAQKHSGQV TSLVDLADLE KGLTDNRSIN  60
DSRFSSTSFP TAGDVLGQHT SVFFDPTKGL WKCRHCDWTH RSISPCRNVD FPNYQRCGQV  120
TMEAPFGMGS LLGKLRMLLA PQECRLPSRV KDRMHLLKED VEDLSEYLAE MAEAEDLPLT  180
AKRWMKEARE LAYDMEDNMD ICLQPARASI NTTRFICKIG RHVKIPKRLF SKRRLPKGLK  240
WHKQIAYIAQ VPAEHSGKTR SVCKAIRVVI IRLPKRLKWY KHIMELISDF RITFRRRFLP  300
ANHTLLTAYG GIADMVIDDR VCEFIDSLDN DGDQQLKVVS VLGPGCLGKT ALAQVLYNKF  360
GGQFDCTAFV RVSKRPDVVR LLREMLTQVQ GQQPTEYSKE LDLAYSIREH LQDKRYLIII  420
DDIWTASAWD IISDAFPKEG TRQALNLSYN NLPHYLKICL LCLNMYPEGH TIWKDDLVKQ  480
WVAEGFIHTT EGQDMEKVAA SYFDELINRR FIQTLCSKYN NEVLSCTVHD VVHDLIADKC  540
SEENFNMVID SSRRNVALSQ KVRRLSLLFG DAKYVKTPAN MRRSQVRSLT IFGLFESMPS  600
ISEFKLLRVL NLQLSGYGDR NTINLTGISD LFQLRYLKIA CDICIQLPNH MLGLQCLETL  660
VLDSEVTAVP WDIIHLPSLL HLSLLVMTNL LDWIGSMRLI GKLNNLRDLH LTYSVPSSDH  720
LKRSMEALGS QLSGHANLKT LALVNGPCHK NAFVRDALKV TVSWEGLVPP PVLEVFEWSL  780
HSCVLSRIPK WIGELGKLRI LKIAVRDLPR DGIDAVRGLP ALTALSLYLQ TAAVERIVFD  840
KVGFSVLNYF NLRCSVPCLK FEANAMPNLR KLKLGFNAPR ARMDQHGAST AISIDHLPSL  900
KEICAKIGGA CADTESALAT AISNHPSNPM INVQLVDYTF DGDELTHENK EQDEVLVEGQ  960
DGYLKKLLIS CARAVEAKDM SAVDMMVPEL RKMVSVSGDP HQRLGAYIVE GLVARLASSG  1020
HSIYKALKCK EPRSSDLMSY MHFLYEACPY FKFGYMSANG AIAEAVKGED MIHIIDFGIS  1080
QGAQWVPLLQ ALATRPGGPP TVRITGIDDS LSAYARGGGL DLVGRRLSHI AGLCKVPFEF  1140
HSVAVAGDEV KEGHLMVIPG EALAVNFTLE LHHIPDEAVS TANHRDRILR LVKSLSPKVV  1200
TLVEQELNTN TVPFKQRFAE TLDYYTAIFE SIDLTLPRDD RERINMEQHC LAREIVNIVA  1260
CEGAERVERH EVFGKWKGRL MMVGFRPCPL SSLVNATIRT LLQSYSANYQ LAERDGVLYL  1320
GWKNKPLVVS SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-6696813348375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155316.10.0putative disease resistance RPP13-like protein 2
TrEMBLM8BJT00.0M8BJT0_AEGTA; Chitin-inducible gibberellin-responsive protein 2
STRINGEMT070280.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8320712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-166scarecrow-like 5