PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | AP2 | ||||||||
Protein Properties | Length: 571aa MW: 60534.2 Da PI: 6.6441 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.4 | 5.5e-11 | 194 | 250 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g EMT06985 194 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGKQ-GGYDKEDKAARAYDLAALKYWG 250 57*******************5544.2354448877.6699999*************98 PP | |||||||
2 | AP2 | 51.8 | 2.1e-16 | 293 | 344 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g EMT06985 293 SKYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 344 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.51E-13 | 194 | 260 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.28E-15 | 194 | 260 | No hit | No description |
Pfam | PF00847 | 2.9E-8 | 194 | 250 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.239 | 195 | 258 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-20 | 195 | 264 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-10 | 195 | 258 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 196 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 293 | 353 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-10 | 293 | 344 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.75E-22 | 293 | 354 | No hit | No description |
SMART | SM00380 | 2.1E-31 | 294 | 358 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.361 | 294 | 352 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-18 | 294 | 352 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 334 | 354 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MTGLRACANY GVMDAFNGGT QETQDWAMRG LDYHGGSSEL SMLVGSSGGR MTVDDGEAPK 60 LEDFLGGNSF SDVQDHAGSY LFSSGSAMGS GAASGSHGAQ HDQEMSADAS ATRGACSGAP 120 GSTGNGVGVA SSRGQGLALS MSMGSNSHPQ MPVVPAAVGT ESTSSENKRV DSPSAGTADA 180 VQRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGKQGG YDKEDKAARA 240 YDLAALKYWG TTTTTNIPIS TYEKEIEEMK HMTRQEYIAY LRRNSSGFSR GASKYRGVTR 300 HHQQGRWQAR IGRVAGNKDL YLGTFTTEEE AAEAYDIAAI KFRGLNAVTN FDITRYDVDQ 360 IVGGAARRLK EAAELAEAGV WRAEDGSIVS HLQADAMAGY HHGWPTSIAF GSHQQQQSAA 420 QLALHYPYGV GGQARGWCKP EQDAVIAAGH GGQDMQELHL GSGGSTHNFF QPASRTAVYG 480 NGGGGAWYQG LGGNAYMMPV GTVVDADQGH SGSTATTEEG RLVGYGAEAG VDPYAAMRRA 540 YELSQGSSSV SVAKVADGYS NNWSSPFNGM G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364030 | 0.0 | AK364030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020P23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196244.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM2 | ||||
Swissprot | Q5YGP7 | 1e-115 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | M8AZ41 | 0.0 | M8AZ41_AEGTA; Uncharacterized protein | ||||
STRING | EMT06985 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-104 | AP2 family protein |