PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27277.5 Da PI: 6.9559 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.8e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll+ +v+q G g+W+++a+ g++R++k+c++rw +yl EMT06866 15 KGPWTAQEDKLLLGYVRQQGDGRWNSVAKLTGLKRSGKSCRLRWVNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++ EMT06866 68 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.911 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.933 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-24 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.19E-10 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEQFGWGREE GGWRKGPWTA QEDKLLLGYV RQQGDGRWNS VAKLTGLKRS GKSCRLRWVN 60 YLRPDLKRGK ITPQEESVIL ELHALWGNRW STIARSLPGR TDNEIKNYWR THFKKGKPSS 120 KNIERARARF LKQRREIMQG HHEHQRDDDD DLAMMRDMAD MDEFLQYDHH PMSMSAYFLL 180 DGGDGAASDA GSSGEITTCG ATWGSLWNLD DVDVVDDVGG GGACGWGSFA LLQDHGLAFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 15 | 115 | 7 | 106 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099283 | 1e-143 | AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence. | |||
GenBank | AK111807 | 1e-143 | AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172671.1 | 1e-154 | transcription factor MYB57-like | ||||
TrEMBL | M8AQQ7 | 1e-177 | M8AQQ7_AEGTA; Transcription factor MYB48 | ||||
STRING | EMT06866 | 1e-178 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-65 | myb domain protein 79 |