PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRF | ||||||||
Protein Properties | Length: 605aa MW: 64005.9 Da PI: 7.5561 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.6 | 2.2e-23 | 120 | 164 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC +++ +++k+CErH+hrgr+rsrk++e+ EMT06854 120 DPEPGRCRRTDGKKWRCAKEAASDSKYCERHMHRGRNRSRKPVET 164 79****************************************997 PP | |||||||
2 | QLQ | 60.4 | 5.2e-21 | 58 | 93 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvPp+L+++i++ EMT06854 58 PFTAAQYEELEHQALIYKYLVAGVPVPPDLVLPIRR 93 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-11 | 57 | 93 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.5E-15 | 58 | 92 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.096 | 58 | 93 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.99 | 120 | 164 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.3E-20 | 121 | 163 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MAMPYASLSP AGDRRSSPAA TASLLPFCRS SPFSAGGGNG GMGEEARMDG RWMARPVPFT 60 AAQYEELEHQ ALIYKYLVAG VPVPPDLVLP IRRGIESLAA RFYHNPLAIG YGSYLGKKVD 120 PEPGRCRRTD GKKWRCAKEA ASDSKYCERH MHRGRNRSRK PVETQLVPHT QPPAASAVPP 180 LATGFHSHSL YPAIGGSTNG GGGGGNNGMS MPSTFSSALG PPQQHMGSNA ASPYAALGGA 240 GTCKDFRYTA YGIRSLADEH SQLMTEAMNT SVENPWRLPP SSQTTSFPLS SYAPQLGATS 300 DLGQNNNHNN SSSNSAVKSE RQQALALPGG GGLGGGGPRA PAEHRLTFGF DMNFRYTAYG 360 IRSLADEHSQ LMTEAMNTSV ENPWRLPPSS QTTSFPLSSY APQLGATSDL GQNNNHNNSS 420 SNSAVKSERQ QPPSSPGCGD FGGGGMDSAK QENQTLRPFF DEWPKTRDSW SDLTDDNSSL 480 ASFSATQLSI SIPMTSSDFS AASSQSPNDA KTTWQLSCTG STAYTGWTKA WGLGKGAIIA 540 AAAVVVVAQP PAGWICTAPS FQTWWTNDRL CAGPPENGAT ATTLGMFGYI ADSAWPGDPG 600 SIEPV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences (PubMed:24532604). Transcription activator that plays a regulatory role in grain development (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates the expression of genes promoting cell proliferation (PubMed:26187814, PubMed:26936408). Activates the expression of expansin genes to promote cell expansion and grain size (PubMed:27250747). May promote grain size by activating brassinosteroid responses (PubMed:27250747). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1 regulatory module that plays an important role in grain size determination (Probable) (PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269|PubMed:24532604, ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747, ECO:0000269|PubMed:27250749, ECO:0000305|PubMed:26187814, ECO:0000305|PubMed:27107174, ECO:0000305|PubMed:27250747, ECO:0000305|PubMed:27250749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: The microRNA396c negatively regulates GRF4 at the transcriptional level. {ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165187.1 | 0.0 | growth-regulating factor 4-like | ||||
Swissprot | Q6ZIK5 | 1e-130 | GRF4_ORYSJ; Growth-regulating factor 4 | ||||
TrEMBL | M8AZS6 | 0.0 | M8AZS6_AEGTA; Uncharacterized protein | ||||
STRING | EMT06854 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-43 | growth-regulating factor 5 |