PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT06833

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 639aa MW: 71792.4 Da PI: 6.3672

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT06833	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.8	3.7e-13	39	96	1	59
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetr 59 +fY+ YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++r EMT06833 39 DFYSLYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRNCEglhP----DQKQQER 96 6******************************************99995541....3333333 PP
2	FAR1	89.5	4.6e-28	144	236	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l EMT06833 144 FYINYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKeitdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLL 236 9***************************************99999998899999********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-10	39	95	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.5E-26	144	236	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50103	10.352	397	425	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MEISSHEPSE AEILIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISRYTRS 60 RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTVPP RKLDIRSAHQ DLNPVEKPHS 120 AEEDPVEEPV EGMEFDSEET AKLFYINYAR LNGFRARISR YCRSRRDNSI ISRQIVCSKE 180 GFREVRAKKE ITDEGKTKRP RMITRVGCKA MIVVKKMNSG KWMVSKFEKE HNHSLLSSKQ 240 APSTSNITSG ENAEFAAKSS DPDEAKVEEY SAGIQCNSTD SLTVLYNQLC QEAIKFAKEG 300 SVTEEIYHVA MSALKEAAEK VAQLKSCHPT MPHRGVSSSE SKHKVVQMKT MSASQCSDVA 360 KQKTTPSQLT MFQESTSKLM FIPTNLLTDS GLANSDNNHP SLCAFTSSGR QCRHGSECSY 420 LHAENRKEDC PEKYQTTAVF IEWEQFYLFK KEERSKMEYG KFSMDRTYEK TDGQYKLLAA 480 PIEAVPISYR PAEPIRQPKR SFCNLGPLPG VMSELTRREK GPHPLVHATA LACGARVVPV 540 EEAASLIKAI ESKIRSGGAK IARLPSSRLT RLVPEAVSMS SSSEDGEDND HSEPPAVNVE 600 GYCHDDQISE EMKLQGEASE LETDSENCSG HENHDTADC

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MEISSHEPSE AEILIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISRYTRS  60
RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTVPP RKLDIRSAHQ DLNPVEKPHS  120
AEEDPVEEPV EGMEFDSEET AKLFYINYAR LNGFRARISR YCRSRRDNSI ISRQIVCSKE  180
GFREVRAKKE ITDEGKTKRP RMITRVGCKA MIVVKKMNSG KWMVSKFEKE HNHSLLSSKQ  240
APSTSNITSG ENAEFAAKSS DPDEAKVEEY SAGIQCNSTD SLTVLYNQLC QEAIKFAKEG  300
SVTEEIYHVA MSALKEAAEK VAQLKSCHPT MPHRGVSSSE SKHKVVQMKT MSASQCSDVA  360
KQKTTPSQLT MFQESTSKLM FIPTNLLTDS GLANSDNNHP SLCAFTSSGR QCRHGSECSY  420
LHAENRKEDC PEKYQTTAVF IEWEQFYLFK KEERSKMEYG KFSMDRTYEK TDGQYKLLAA  480
PIEAVPISYR PAEPIRQPKR SFCNLGPLPG VMSELTRREK GPHPLVHATA LACGARVVPV  540
EEAASLIKAI ESKIRSGGAK IARLPSSRLT RLVPEAVSMS SSSEDGEDND HSEPPAVNVE  600
GYCHDDQISE EMKLQGEASE LETDSENCSG HENHDTADC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176088.1	0.0	uncharacterized protein LOC109761678
TrEMBL	M8BJA3	0.0	M8BJA3_AEGTA; Protein FAR1-RELATED SEQUENCE 7
STRING	EMT06833	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-29	FAR1 family protein