PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06748
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 268aa    MW: 29394.8 Da    PI: 7.9459
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06748genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-141465148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg...kgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++  G+g +W + + +     ++R++k+c++rw++yl
         EMT06748 14 KGPWSPEEDRKLKDYIHTNGTGgNWIALPTKADvsgLKRCGKSCRLRWLNYL 65
                     79************************************************97 PP
2Myb_DNA-binding37.65.2e-1272114246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
         EMT06748  72 GDFSDEEDRVICALFAAIGSR-WSIIAAQLP-GRTDNDVKNYWNT 114
                      679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.244965IPR017877Myb-like domain
SuperFamilySSF466891.17E-2512112IPR009057Homeodomain-like
SMARTSM007175.2E-101367IPR001005SANT/Myb domain
PfamPF002492.7E-131465IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-221572IPR009057Homeodomain-like
CDDcd001671.72E-81665No hitNo description
PROSITE profilePS5129422.26266120IPR017930Myb domain
SMARTSM007173.1E-1170118IPR001005SANT/Myb domain
PfamPF002492.7E-1072114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2273119IPR009057Homeodomain-like
CDDcd001677.46E-874114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRAPCCDKG SVKKGPWSPE EDRKLKDYIH TNGTGGNWIA LPTKADVSGL KRCGKSCRLR  60
WLNYLRPNIK HGDFSDEEDR VICALFAAIG SRWSIIAAQL PGRTDNDVKN YWNTKLKKKQ  120
LHLLIAAAAH GQQYGSRPPA PPFAPEQQHH HHTSSTSIAS LGQLLMFGGR GGDQQQQQQY  180
TSSFSSVDIS NNTSAAAVGL QESFMFGGLQ FQQQEEETNN LLSPPAASSS GNDIMTYEHH  240
EMISPSGFFF YGDGAGAAAT QEGTRFLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141197107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0651833e-49BT065183.2 Zea mays full-length cDNA clone ZM_BFb0024G05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200060.10.0transcription factor RAX2-like
TrEMBLM8BJ380.0M8BJ38_AEGTA; Transcription factor RAX1
STRINGEMT067480.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-71myb domain protein 36