PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06526
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 446aa    MW: 50380 Da    PI: 7.1357
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06526genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.65.1e-83214334374
      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               +L+ec  +v +g+ e++++   ++s+las  + p+qR+   ++  La+rl   v++ ++al  ps+    ++s   aa++ f ++sP+l  +++t N+a+l
  EMT06526  21 ALYECMAHVIEGSVEKTDRSFMKISKLASVVDGPLQRMSRIIAHSLARRLICPVQGFAAALiDPSHYL--EQSCLRAARENFADISPYLSTGFVTINRAML 119
               799*************************************************9999887774444443..35555567788******************** PP

      GRAS 104 eavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkp 198
               e v+ ++ v i+D++ s     QW+ +lq + sRp+gpp+lR+T+v++    ++e l +++  L k A++l++ f f+  v  +le+l++++L    +++ 
  EMT06526 120 EQVQDQKVVRIVDLSCSTThqWQWIKILQDFHSRPGGPPELRLTVVHE----DSEFLDNMQACLCKQAANLKLCFYFDK-VIGKLETLDFSNLreilKINF 215
               **************98766115789***********************....9**************************.688999999998843335555 PP

      GRAS 199 gEalaVnlvlqlhrll...........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
               gEa++++++lq+hrll                                           + + +++s   ++L +++ l+Pk++v++eq+adhn++ F +r
  EMT06526 216 GEAVVISCALQMHRLLavddsisrdftaqlqqmanmarlkqmacsacspastlnypqtpSPQRQIPSLLVSFLYAIRALEPKIIVMMEQDADHNAPLFHDR 316
               ********************************************************988667777778899****************************** PP

      GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
               f+++++yy+alfdsl+a   ++s +r+ vEr+llg+ei+n++ ceg +r erhe+l++W++ ++++    vpls +a  + k  l  ++ +  + +e+++ 
  EMT06526 317 FTKTVDYYAALFDSLNAV-DAASPQRARVERVLLGEEIKNILVCEGVQRHERHERLSQWEMHMQRCEVDHVPLSFEAIREGKERLMSYGLKQCKSKEDKAG 416
               ***************876.7899******************************************************************888********* PP

      GRAS 358 lvlgWkdrpLvsvSaWr 374
               l+l+W   +L+s+SaWr
  EMT06526 417 LLLCWGATRLYSISAWR 433
               ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.5521413IPR005202Transcription factor GRAS
PfamPF035141.8E-8021433IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDRPCAHEQV TADDLTQLGP ALYECMAHVI EGSVEKTDRS FMKISKLASV VDGPLQRMSR  60
IIAHSLARRL ICPVQGFAAA LIDPSHYLEQ SCLRAARENF ADISPYLSTG FVTINRAMLE  120
QVQDQKVVRI VDLSCSTTHQ WQWIKILQDF HSRPGGPPEL RLTVVHEDSE FLDNMQACLC  180
KQAANLKLCF YFDKVIGKLE TLDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDSISRD  240
FTAQLQQMAN MARLKQMACS ACSPASTLNY PQTPSPQRQI PSLLVSFLYA IRALEPKIIV  300
MMEQDADHNA PLFHDRFTKT VDYYAALFDS LNAVDAASPQ RARVERVLLG EEIKNILVCE  360
GVQRHERHER LSQWEMHMQR CEVDHVPLSF EAIREGKERL MSYGLKQCKS KEDKAGLLLC  420
WGATRLYSIS AWRPRSSNAA PNNVAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-312443624381Protein SCARECROW
5b3h_D4e-312443624381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759190.0AK375919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3109N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187419.10.0scarecrow-like protein 3
RefseqXP_020187421.10.0scarecrow-like protein 3
RefseqXP_020187422.10.0scarecrow-like protein 3
TrEMBLA0A3B6JH500.0A0A3B6JH50_WHEAT; Uncharacterized protein
TrEMBLA0A453HQM10.0A0A453HQM1_AEGTS; Uncharacterized protein
TrEMBLM8APN20.0M8APN2_AEGTA; Uncharacterized protein
STRINGEMT065260.0(Aegilops tauschii)
STRINGTraes_4DS_5644BB36D.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-73scarecrow-like 3