PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 23987.9 Da PI: 6.5812 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 187 | 209 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+++F+++ + H++ H EMT06503 187 YKCKICDRTFNSSQAYGGHMKFH 209 9*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.59E-5 | 186 | 213 | No hit | No description |
Pfam | PF13912 | 1.2E-6 | 187 | 210 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.004 | 187 | 209 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 187 | 214 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 189 | 209 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDPNGSYPNK VTSTESEANV ALSTLPPNLP DAQFTPLSMA NTHNSNPNHR EIIENQPEML 60 SYQAFLSNPI KNYFGSSDLR RILSMESPSV TSLLQGDPVA VVHAHLNTIG ATDDGPIFKI 120 PTTHVIEEQQ NIPHGALTHD ATDGVPTPLA PFMTSPHGLR EDKTPIGGPN VVTESVIVHD 180 STSLCKYKCK ICDRTFNSSQ AYGGHMKFHS IERKKRFQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231926.2 | 7e-54 | uncharacterized protein LOC104582794 | ||||
TrEMBL | A0A453E7J9 | 1e-162 | A0A453E7J9_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BIC7 | 1e-162 | M8BIC7_AEGTA; Uncharacterized protein | ||||
STRING | EMT06503 | 1e-162 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11492 | 6 | 12 |