PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06416
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 301aa    MW: 33581.7 Da    PI: 10.0579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06416genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.6e-1360107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS..-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR..tlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR  t+k+c++rw++ 
         EMT06416  60 RGHWRPAEDMKLRELVALYGPQNWNLIAEKLD-GRsdTGKSCRLRWFNQ 107
                      899*****************************.773368*******996 PP
2Myb_DNA-binding52.41.2e-16115157246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
         EMT06416 115 RPFSDEEEEKLMAAHRFYGNK-WSMIARLFP-GRTDNAVKNHWHV 157
                      68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.98655108IPR017930Myb domain
SMARTSM007175.4E-1059110IPR001005SANT/Myb domain
SuperFamilySSF466898.2E-2660155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-2361115IPR009057Homeodomain-like
PfamPF139211.1E-1363125No hitNo description
CDDcd001674.11E-1163106No hitNo description
PROSITE profilePS5129424.836109163IPR017930Myb domain
SMARTSM007172.2E-13113161IPR001005SANT/Myb domain
CDDcd001679.03E-11116156No hitNo description
Gene3DG3DSA:1.10.10.601.3E-20116162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVAANDDQAS SSSSSKGGVA VLTTGTPTID TGYRGGGGEG GNAADPQESS SSGQSRLAAR  60
GHWRPAEDMK LRELVALYGP QNWNLIAEKL DGRSDTGKSC RLRWFNQLDP RISKRPFSDE  120
EEEKLMAAHR FYGNKWSMIA RLFPGRTDNA VKNHWHVIMA RKYREQSIAY RRRKLNQAVQ  180
RKLDSSSGEK QIFKNRGPGA ASNSVHDGRL SWPDAMAGRS MSAISAVDGC MTRSWPDPDN  240
SRKNCIDRKL KYKCEYINKY RVPSTRPTGL TFDGPRNPWY MAPSVAPELV FELGHLQVDV  300
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29591626107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-139HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184298.11e-122transcription factor MYB21-like
TrEMBLM8APE10.0M8APE1_AEGTA; Transcription factor MYB44
STRINGEMT064160.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-69myb domain protein 105