PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | Trihelix | ||||||||
Protein Properties | Length: 385aa MW: 41417.3 Da PI: 9.7659 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.8 | 1.2e-12 | 3 | 74 | 17 | 86 |
trihelix 17 meerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 + e+l+rg+l++ +We+v++++ + +s +qCk+k++nl+kryk + ++ + s s s +p+++q+e EMT06403 3 RFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASASLWPWYKQME 74 568999****************6655344446899***************88888877..467779*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.2E-14 | 5 | 76 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 8.2E-70 | 139 | 378 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 5.63E-51 | 143 | 378 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.329 | 143 | 379 | IPR015963 | Uridylate kinase, bacteria |
Pfam | PF00696 | 5.1E-16 | 146 | 358 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 3.93E-110 | 146 | 379 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0046939 | Biological Process | nucleotide phosphorylation | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDRFEQLNRG NLRGRDWEDV AAAVTDGQGK SSGGKSVEQC KNKIDNLKKR YKVECQRIAG 60 SASASLWPWY KQMEQIMGNS PSPGTPKPPA ATNDKARAAG ARAWSSVRIR STTSRSGTRY 120 PSSGTGHTTT MVPYSRSTPL SNPKWKRVLL KIGGTALAGE APHNVDPKVI MLIAREVQVA 180 CRHGVEVAIL MGGRNVFCAD SWVAATGTDR ASTHPIGMMA AVMNAVLLQA SLEKIGVETR 240 VQTALMMQEV AEPYIRRRAI RHLEKGRVVI FGGTGAGTGN PLFTTDTAAA LRASEINADV 300 VLKGVIGDDE YGCPPRSNGS APFEHISFRE LAARGTSKMD MTAITCCEEN NIPVVIFNML 360 EPGNMSRAIC GDQVGTLVDQ SGRIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek5_B | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek5_C | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek5_D | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek5_E | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek5_F | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek6_A | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek6_B | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek6_C | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek6_D | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek6_E | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
3ek6_F | 6e-64 | 137 | 378 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369935 | 0.0 | AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159183.1 | 0.0 | uncharacterized protein LOC109744472 | ||||
Swissprot | Q7VD61 | 4e-80 | PYRH_PROMA; Uridylate kinase | ||||
TrEMBL | M8BI42 | 0.0 | M8BI42_AEGTA; Uridylate kinase | ||||
STRING | EMT06403 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1935 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 1e-138 | Trihelix family protein |