PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06396
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 627aa    MW: 68712 Da    PI: 5.0287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06396genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM972.9e-30561991128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgy 82 
               lp+G++F+P+d el+ e+L++k+          +  +e+i++v+    i++++P++Lp  ++++ ++ +fF++ +++y  g+rk+r           ++ +
  EMT06396  56 LPAGVKFDPSDLELL-EHLEQKIGVGGskphmfI--DEFIPTVEndagICYSHPENLP-GTNKDGSSAHFFHSISNAYGCGQRKRRRisnsdrttsDEHVR 152
               799************.99****876554555332..333444422344**********.556677899*****************9657888865444889 PP

       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128
               W++tgk+k+v++ +g  +g kk+Lv+ykg++  g+  ktdWvmh+y+l
  EMT06396 153 WHKTGKSKPVYD-NGVMKGWKKILVLYKGSQTGGKpdKTDWVMHQYHL 199
               ************.999***********9987766555*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3641218IPR003441NAC domain
PROSITE profilePS5100530.86756218IPR003441NAC domain
PfamPF023656.8E-1357199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MQQSWLITCR GVAKKVRNAH CSNRQISEVG AEACRECPNC KHIIDNSDVA IQWPGLPAGV  60
KFDPSDLELL EHLEQKIGVG GSKPHMFIDE FIPTVENDAG ICYSHPENLP GTNKDGSSAH  120
FFHSISNAYG CGQRKRRRIS NSDRTTSDEH VRWHKTGKSK PVYDNGVMKG WKKILVLYKG  180
SQTGGKPDKT DWVMHQYHLG VEENEKVGEF VVSKIFYQLK TRPVDKSEAE MANEESTAFT  240
ASICPKTPMT KIPPCRPKNS PCETEQNDPG QEEETVSLAE NAKNPAWCAL SSQPVEVALE  300
AGTCSLDKSL SHHEVLDSSN LENSTFDRPI LSQLMNETLN KNLCALHGLP DLHNVNLGTA  360
PTDLQITKGE NVSLVDDAEN TACCSLVSQD VEVTSQAGTS LVESLLHHEV SDLHSANLGT  420
PRDLQIAKEE SVSLMDEAEK WCGLASQAVD VASHAWTSLD ESLRCHEVLD SFDHEKSLTF  480
DRPIYSQGRD GGLENNLYSL NGLPDLQGVD LGTPIDDLQV AGLQFYSQES LGSWLERMSA  540
LVKLVMKNDG TVCNVVYNVK PTILNGLDPA WKGYNFGMLE YFAKLELSTP KQSRASLCPM  600
PSWHAAAEAA AGRAGLAYAA SEAACDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137RKRRR
2134138KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743040.0AK374304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3060A12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173041.10.0uncharacterized protein LOC109758588 isoform X1
TrEMBLM8APC60.0M8APC6_AEGTA; NAC domain-containing protein 8
STRINGEMT063960.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-81NAC domain containing protein 44