PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | TALE | ||||||||
Protein Properties | Length: 121aa MW: 14492.7 Da PI: 10.0842 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.8e-10 | 45 | 83 | 17 | 55 |
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 e+ +k +yps++++ LA+++gL+ +q+ +WF N+R ++ EMT06308 45 EMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 83 5566789*****************************985 PP | |||||||
2 | ELK | 39.2 | 1.5e-13 | 3 | 24 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+Ll+KYsgyL+sLkqE+s EMT06308 3 ELKHHLLKKYSGYLSSLKQELS 24 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 11.331 | 3 | 23 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.8E-10 | 3 | 24 | IPR005539 | ELK domain |
SMART | SM01188 | 4.9E-7 | 3 | 24 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.665 | 23 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.35E-20 | 24 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.1E-13 | 25 | 90 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 28 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.34E-12 | 35 | 87 | No hit | No description |
Pfam | PF05920 | 2.6E-17 | 43 | 82 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MEELKHHLLK KYSGYLSSLK QELSKKKKKG KLPKDARQQL LSWWEMHYKW PYPSESQKVA 60 LAESTGLDLK QINNWFINQR KRHWKPSDEM QFVMMDAYHP PNAAFYMDGH FVNDSGLYRF 120 G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF224500 | 0.0 | AF224500.1 Triticum aestivum KNOTTED-1-like homeobox protein d (knox1d) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147582.1 | 3e-84 | homeobox protein KNOX3 | ||||
Swissprot | Q43484 | 7e-76 | KNOX3_HORVU; Homeobox protein KNOX3 | ||||
TrEMBL | A0A3B6JFV4 | 7e-83 | A0A3B6JFV4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453H9G5 | 6e-84 | A0A453H9G5_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453H9X9 | 7e-83 | A0A453H9X9_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BHW4 | 2e-84 | M8BHW4_AEGTA; Homeobox protein KNOX3 | ||||
TrEMBL | Q9LE11 | 7e-83 | Q9LE11_WHEAT; KN1 homeobox protein | ||||
STRING | EMT06308 | 3e-85 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9886 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 6e-44 | KNOTTED-like from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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