PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT06273

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Nin-like

Protein Properties

Length: 421aa MW: 47895.5 Da PI: 6.328

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT06273	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.7	6.2e-25	202	249	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s++++s++F +pik+AA +L+v+lT+LKr+CR++GI+RWPhRk+ksl EMT06273 202 LSFQQVSRCFCMPIKQAAEKLNVGLTLLKRQCRELGIPRWPHRKLKSL 249 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.824	186	270	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-20	202	249	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MESFRSYGEE GDGCYFQNLK LHEEDHCFLD FRNRSIFCMY LLRQWSFEYL LEISLFYPTQ 60 HLCDTSTSST TTTTSQSCLL QDEFDATLFE GDILSFWPAL QERAHLKEVK QEPDGDAAEK 120 KHDGSGEALF SSTQHLCTNT TTAQSCFSQD QQELEARLEV HIMSLLAALE GEHHGGEKVM 180 KGEVGRDAGE KKRNGPEEKP LLSFQQVSRC FCMPIKQAAE KLNVGLTLLK RQCRELGIPR 240 WPHRKLKSLE TLIKNAQELG KPMIEVEMLR RKKKLIEERP GHIELDEVTK VLRQACFKEK 300 FKRRRLMAME GHRYTYSIAG GVVLEDDEGI VRAGVPFRRA KFKYSVEQVG KAVFDQGWLS 360 TDDGCTSRVA AGITEKWWQQ HMCDFDGAAI RAPGLELWGE SKGLPKLVIP GNDDVSTSLP 420 C

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MESFRSYGEE GDGCYFQNLK LHEEDHCFLD FRNRSIFCMY LLRQWSFEYL LEISLFYPTQ  60
HLCDTSTSST TTTTSQSCLL QDEFDATLFE GDILSFWPAL QERAHLKEVK QEPDGDAAEK  120
KHDGSGEALF SSTQHLCTNT TTAQSCFSQD QQELEARLEV HIMSLLAALE GEHHGGEKVM  180
KGEVGRDAGE KKRNGPEEKP LLSFQQVSRC FCMPIKQAAE KLNVGLTLLK RQCRELGIPR  240
WPHRKLKSLE TLIKNAQELG KPMIEVEMLR RKKKLIEERP GHIELDEVTK VLRQACFKEK  300
FKRRRLMAME GHRYTYSIAG GVVLEDDEGI VRAGVPFRRA KFKYSVEQVG KAVFDQGWLS  360
TDDGCTSRVA AGITEKWWQQ HMCDFDGAAI RAPGLELWGE SKGLPKLVIP GNDDVSTSLP  420
C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	274	LRRKKKL
2	269	274	RRKKKL
3	301	305	KRRRL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	9e-41	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756209.2	1e-57	protein RKD1
TrEMBL	M8BHT4	0.0	M8BHT4_AEGTA; Uncharacterized protein
STRING	EMT06273	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-29	RWP-RK domain-containing protein