PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 26831.8 Da PI: 4.7632 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 23 | 66 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ EMT06211 23 RGCFSQQEEDHIVALHQILGNR-WSQIASHLP-GRTDNEIKNFWNS 66 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.95 | 1 | 17 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.41E-20 | 2 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-4 | 3 | 16 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 17 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.91 | 18 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-13 | 22 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-14 | 23 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-10 | 26 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MPRGCGKSCR LRWINYLRPD LKRGCFSQQE EDHIVALHQI LGNRWSQIAS HLPGRTDNEI 60 KNFWNSCIKK KLRQQGIDPA THKPMAAADT ATAPLPDPEE EDRKPLSAAV GGSLAPKQPA 120 VFDPFPVCAD YGGGFAHGLG AENAAALYGQ LVGCKEGADD DAGFGGADYS SVLDVSENLG 180 YGESSSNSSN WNYGGEVGSV LDGEVPHWGK ADMEQQHTPL EHKLSLPCQE QSLLASFDFN 240 LELEPYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-20 | 5 | 72 | 41 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM066946 | 0.0 | KM066946.1 Triticum aestivum R2R3-MYB transcription factor (MYB86) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180810.1 | 0.0 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-141 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | M8ANW6 | 0.0 | M8ANW6_AEGTA; Myb-related protein Hv33 | ||||
STRING | EMT06211 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 1e-43 | myb domain protein 55 |