PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT06008

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 713aa MW: 80949.1 Da PI: 7.3015

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT06008	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	359.5	5e-110	333	705	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cA+av+++++ la++lL+++++++s dgd +qRla+y++ +L+arl + +s++y l ++ts ++ + a++lf ++P+++ s+ aNq+ EMT06008 333 LRTLLVHCAQAVAQDNHLLASELLKKIRQHSSADGDCTQRLAFYLADGLEARLGGIGSHVYGNLMERRTS---AADWFEAYRLFIAACPFIRASYYFANQT 430 6789*******************************************************999999998...899********************* PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 Il+ +++ rvHi+Df+i G+QWp ++q+La+R+eg+p+lRiTg++ p+ g e++eetg+rLa++A+ ++vpf+++ ++a r+e++++e+L+++++E EMT06008 431 ILDVSQRQPRVHIVDFGIDFGFQWPLMIQKLAQREEGAPKLRITGIEVPQLGfhPCEMIEETGKRLADYANMFKVPFQYQGIAAPRWETVKIEDLNIDEDE 531 **********************************************999999*********************9999************ PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +l++n+++++++l +e+ +++s+rdevLk++++++Pkv++ + h+s+ F +rf e + +ys++fd+l+a +pr++e+r+++Er +gr++ n++ace EMT06008 532 VLIINCIFRMKNLGHETEAINSARDEVLKTMRRMNPKVLISGTVNGLHSSPFFIQRFKEVMLHYSSMFDMLDAIVPRDNEARKMIERIPFGRDALNIIACE 632 ************************************************************************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aer++r e++++W++r+ +a F+++p++ + k++ ++ + ++ +++ e+ g+l++gWk+r L++vS W+ EMT06008 633 DAERTQRPESYRQWQARFLKARFQQLPVDPAILKKIVHMKNLHYHEEFFAVEDCGWLLQGWKGRVLYAVSKWE 705 ****************************************999***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.297	307	685	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-107	333	705	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MAIEPLRVNL DAVAATDQPY HGDSSSQQQL TVHNYDVSGP HSTVLSPANQ ASVNSSHGQN 60 QFLIAAGGSP EHRQIRSNDA LHYISQMLME ENDERVDICQ GEAALQAAEK PFRDILGEVC 120 APATNRPPLR SNSKPDNADK SGTSCYKRLW STSFSNDCSS YSLLQPLTTP LSPYICNSGL 180 SLQKRPLTSV GPTSGFGFPA LHCHGGVDEE NMFAPNIDKL EMYLEDGILY ISQLTMKAKV 240 GERSKNTILE VANQRDIFQG RSNKHHAITT CAIIRSENFD RVLLCYGRKS FDLITRLQER 300 MAEEGNKNSQ KGRSKGCRKL WARKQPRKEL VDLRTLLVHC AQAVAQDNHL LASELLKKIR 360 QHSSADGDCT QRLAFYLADG LEARLGGIGS HVYGNLMERR TSAADWFEAY RLFIAACPFI 420 RASYYFANQT ILDVSQRQPR VHIVDFGIDF GFQWPLMIQK LAQREEGAPK LRITGIEVPQ 480 LGFHPCEMIE ETGKRLADYA NMFKVPFQYQ GIAAPRWETV KIEDLNIDED EVLIINCIFR 540 MKNLGHETEA INSARDEVLK TMRRMNPKVL ISGTVNGLHS SPFFIQRFKE VMLHYSSMFD 600 MLDAIVPRDN EARKMIERIP FGRDALNIIA CEDAERTQRP ESYRQWQARF LKARFQQLPV 660 DPAILKKIVH MKNLHYHEEF FAVEDCGWLL QGWKGRVLYA VSKWEPNETY DDQ

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MAIEPLRVNL DAVAATDQPY HGDSSSQQQL TVHNYDVSGP HSTVLSPANQ ASVNSSHGQN  60
QFLIAAGGSP EHRQIRSNDA LHYISQMLME ENDERVDICQ GEAALQAAEK PFRDILGEVC  120
APATNRPPLR SNSKPDNADK SGTSCYKRLW STSFSNDCSS YSLLQPLTTP LSPYICNSGL  180
SLQKRPLTSV GPTSGFGFPA LHCHGGVDEE NMFAPNIDKL EMYLEDGILY ISQLTMKAKV  240
GERSKNTILE VANQRDIFQG RSNKHHAITT CAIIRSENFD RVLLCYGRKS FDLITRLQER  300
MAEEGNKNSQ KGRSKGCRKL WARKQPRKEL VDLRTLLVHC AQAVAQDNHL LASELLKKIR  360
QHSSADGDCT QRLAFYLADG LEARLGGIGS HVYGNLMERR TSAADWFEAY RLFIAACPFI  420
RASYYFANQT ILDVSQRQPR VHIVDFGIDF GFQWPLMIQK LAQREEGAPK LRITGIEVPQ  480
LGFHPCEMIE ETGKRLADYA NMFKVPFQYQ GIAAPRWETV KIEDLNIDED EVLIINCIFR  540
MKNLGHETEA INSARDEVLK TMRRMNPKVL ISGTVNGLHS SPFFIQRFKE VMLHYSSMFD  600
MLDAIVPRDN EARKMIERIP FGRDALNIIA CEDAERTQRP ESYRQWQARF LKARFQQLPV  660
DPAILKKIVH MKNLHYHEEF FAVEDCGWLL QGWKGRVLYA VSKWEPNETY DDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-45	337	704	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU934148	1e-138	EU934148.1 Hordeum vulgare subsp. vulgare cultivar Druvis 1H(5) Mla region 206i20_T7 locus genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198295.1	0.0	scarecrow-like protein 34
TrEMBL	M8BGZ5	0.0	M8BGZ5_AEGTA; Uncharacterized protein
STRING	EMT06008	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-144	GRAS family protein