PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 741aa    MW: 84654 Da    PI: 6.814
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.81.2e-1113387101374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cA+av+++++ la++lL ++++++s dgd +qRla+y++ +L+arl++s+s++y+ l  ++t+   +++ l a++lf  ++P+ + s+  aNq+
  EMT06007 338 LRTLLIHCAQAVAEDHHLLASELLLKIRQHSSADGDCTQRLAFYLVDGLEARLVGSGSQIYHNLMERRTN---TTDWLEAYSLFLAACPFKRASYYFANQT 435
               6789**********************************************************99999998...8999************************ PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I +  +++ rvHi+Df+i+ G+QWp ++q +a+++eg+p+lRiTg++ p+++    e++eetg+rLa++A+ ++vpf+++ ++a+r+e++++e+L++ ++E
  EMT06007 436 IFDVSQRQPRVHIVDFGIGFGFQWPLMIQRFAQQEEGAPKLRITGIDTPQQSlrPCEMIEETGKRLADYANMFKVPFQYQGIAASRWETIKIEDLNITEDE 536
               **************************************************999999********************************************* PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               +l++n+++++++l +e+ +++ +r+e+Lk++++++Pkv++  + +  h+s+ F +rf e + +ys++fd+l+a++pre+e+r+++Er l++r++ n++ace
  EMT06007 537 VLIINCIFRMKNLGHETEAINGARNELLKTMRQMNPKVFISGNVDGFHSSPFFIQRFKEVMLHYSSMFDMLDANVPRENEARKMIERILFRRDALNIIACE 637
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aer+er e++++W++r+ +aGF+++p++  + k++ ++ +  + +++   e++g+l++gWk+r L+++S W+
  EMT06007 638 DAERTERPESYRQWQARFLKAGFEQLPVDPAILKKIVHMKNSLYHEEFFAVEDRGWLLQGWKGRVLYAISKWK 710
               ******************************************99999*9***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.852312690IPR005202Transcription factor GRAS
PfamPF035144.1E-109338710IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MAIEPLRDNL DTVAATDQPY DCDSTSQQQL TVYNYELSGP HSTVLSPANQ ASTYGGVTSL  60
GQNQVQIAAE GSPEHRRITS NYAIHCISQM LMEDIDERVD ICQEEVALQV AEKPFRDILG  120
QVYTPATNWP PLHSNNETDN PDKSGISCYK RLGSTSFSND CSSYSLVQPL TTPMSPYICN  180
RSLFLPNQPL MSVGWTSGSG FPALHCQRGV EEEKIFASSI DKLVIYVENG ILSISKLTAN  240
AKVGERSTNT TFEVADQRDW DIFQGRSNKH HAITTCAIIR NENFDRVLLC YGRSDQIKRL  300
RERMEGEGNN NLLKGRSKGR AHQKLWARKR PRKELVDLRT LLIHCAQAVA EDHHLLASEL  360
LLKIRQHSSA DGDCTQRLAF YLVDGLEARL VGSGSQIYHN LMERRTNTTD WLEAYSLFLA  420
ACPFKRASYY FANQTIFDVS QRQPRVHIVD FGIGFGFQWP LMIQRFAQQE EGAPKLRITG  480
IDTPQQSLRP CEMIEETGKR LADYANMFKV PFQYQGIAAS RWETIKIEDL NITEDEVLII  540
NCIFRMKNLG HETEAINGAR NELLKTMRQM NPKVFISGNV DGFHSSPFFI QRFKEVMLHY  600
SSMFDMLDAN VPRENEARKM IERILFRRDA LNIIACEDAE RTERPESYRQ WQARFLKAGF  660
EQLPVDPAIL KKIVHMKNSL YHEEFFAVED RGWLLQGWKG RVLYAISKWK PNEIYDDQYD  720
PSGFSSVRTC VGNFPPRYLL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4434471125380Protein SCARECROW
5b3h_A2e-4434471124379Protein SCARECROW
5b3h_D2e-4434471124379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198297.10.0scarecrow-like protein 34
TrEMBLM8BSS50.0M8BSS5_AEGTA; Scarecrow-like protein 9
STRINGEMT060070.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-144GRAS family protein