PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 741aa MW: 84654 Da PI: 6.814 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 364.8 | 1.2e-111 | 338 | 710 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cA+av+++++ la++lL ++++++s dgd +qRla+y++ +L+arl++s+s++y+ l ++t+ +++ l a++lf ++P+ + s+ aNq+ EMT06007 338 LRTLLIHCAQAVAEDHHLLASELLLKIRQHSSADGDCTQRLAFYLVDGLEARLVGSGSQIYHNLMERRTN---TTDWLEAYSLFLAACPFKRASYYFANQT 435 6789**********************************************************99999998...8999************************ PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 I + +++ rvHi+Df+i+ G+QWp ++q +a+++eg+p+lRiTg++ p+++ e++eetg+rLa++A+ ++vpf+++ ++a+r+e++++e+L++ ++E EMT06007 436 IFDVSQRQPRVHIVDFGIGFGFQWPLMIQRFAQQEEGAPKLRITGIDTPQQSlrPCEMIEETGKRLADYANMFKVPFQYQGIAASRWETIKIEDLNITEDE 536 **************************************************999999********************************************* PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +l++n+++++++l +e+ +++ +r+e+Lk++++++Pkv++ + + h+s+ F +rf e + +ys++fd+l+a++pre+e+r+++Er l++r++ n++ace EMT06007 537 VLIINCIFRMKNLGHETEAINGARNELLKTMRQMNPKVFISGNVDGFHSSPFFIQRFKEVMLHYSSMFDMLDANVPRENEARKMIERILFRRDALNIIACE 637 ***************************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aer+er e++++W++r+ +aGF+++p++ + k++ ++ + + +++ e++g+l++gWk+r L+++S W+ EMT06007 638 DAERTERPESYRQWQARFLKAGFEQLPVDPAILKKIVHMKNSLYHEEFFAVEDRGWLLQGWKGRVLYAISKWK 710 ******************************************99999*9***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.852 | 312 | 690 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-109 | 338 | 710 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MAIEPLRDNL DTVAATDQPY DCDSTSQQQL TVYNYELSGP HSTVLSPANQ ASTYGGVTSL 60 GQNQVQIAAE GSPEHRRITS NYAIHCISQM LMEDIDERVD ICQEEVALQV AEKPFRDILG 120 QVYTPATNWP PLHSNNETDN PDKSGISCYK RLGSTSFSND CSSYSLVQPL TTPMSPYICN 180 RSLFLPNQPL MSVGWTSGSG FPALHCQRGV EEEKIFASSI DKLVIYVENG ILSISKLTAN 240 AKVGERSTNT TFEVADQRDW DIFQGRSNKH HAITTCAIIR NENFDRVLLC YGRSDQIKRL 300 RERMEGEGNN NLLKGRSKGR AHQKLWARKR PRKELVDLRT LLIHCAQAVA EDHHLLASEL 360 LLKIRQHSSA DGDCTQRLAF YLVDGLEARL VGSGSQIYHN LMERRTNTTD WLEAYSLFLA 420 ACPFKRASYY FANQTIFDVS QRQPRVHIVD FGIGFGFQWP LMIQRFAQQE EGAPKLRITG 480 IDTPQQSLRP CEMIEETGKR LADYANMFKV PFQYQGIAAS RWETIKIEDL NITEDEVLII 540 NCIFRMKNLG HETEAINGAR NELLKTMRQM NPKVFISGNV DGFHSSPFFI QRFKEVMLHY 600 SSMFDMLDAN VPRENEARKM IERILFRRDA LNIIACEDAE RTERPESYRQ WQARFLKAGF 660 EQLPVDPAIL KKIVHMKNSL YHEEFFAVED RGWLLQGWKG RVLYAISKWK PNEIYDDQYD 720 PSGFSSVRTC VGNFPPRYLL A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-44 | 344 | 711 | 25 | 380 | Protein SCARECROW |
5b3h_A | 2e-44 | 344 | 711 | 24 | 379 | Protein SCARECROW |
5b3h_D | 2e-44 | 344 | 711 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198297.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | M8BSS5 | 0.0 | M8BSS5_AEGTA; Scarecrow-like protein 9 | ||||
STRING | EMT06007 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-144 | GRAS family protein |