PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | TCP | ||||||||
Protein Properties | Length: 577aa MW: 61551 Da PI: 8.4828 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.8 | 9.5e-35 | 264 | 381 | 1 | 105 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ + +++ + +++++ s++ s + EMT05951 264 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEEAPPTAdPEAAEQMSEQVTSTSsygfgnpggtam 364 689**************************************************************444443333222222222211111244666667666 PP TCP 89 ...........kaaksaakskksqksaa 105 + q s++ EMT05951 365 tnsflqhslgaD-----------QVSDS 381 433333333331...........22222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-31 | 266 | 378 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.615 | 267 | 325 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MAGSGSKSFT SRSIAPELIP CGPEEDVAVR VALGRSRRKP VRVSARTPSV ENPLPPPKWR 60 SPSGVRTQWW TRNPSVGANM ARRAGRARQR AREAATSLVA VDIGEAKSHS PAPRMVHQSK 120 RRNRVMMDVA GSSQDGSIIE LTSISTIRVS GSNEEEYGMG DVGTLSPLKL EEDKNRLSKG 180 LDPWSNPTAA ATTSTLHYLL QEKERAQAQA QLQIYHQQGF GYLHQHRRQQ AGGGGADGGS 240 SGESTPVADA LATAFGSGRI VRSAAGRKDR HSKVCTARGL RDRRVRLAAH TAIRFYDVQD 300 RLGYDRPSKA VDWLIRNAKA AIEELPDRPE EAPPTADPEA AEQMSEQVTS TSSYGFGNPG 360 GTAMTNSFLQ HSLGADQVSD SVKSLFPSSS TATASGHDEY RGSPPDLLSR TTSSQPQELC 420 LTLQSNQHNM FSHVSPNHHG IISGAGVPGW PDHGQRMPSS WHASDNDAGE GRGAGGNGDS 480 YMFAGIPARQ GLDQGQLFSS NGETLQSSAA WAASARAWLD PLAGIHQPSA MSGQIGFSHL 540 VGGGGGGGFM GFLAPAGQRL QLQGEEEEEG SDVMRRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-19 | 272 | 326 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-19 | 272 | 326 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815346.1 | 0.0 | transcription factor PCF7-like | ||||
Swissprot | Q8LT05 | 1e-155 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | M8AN45 | 0.0 | M8AN45_AEGTA; Uncharacterized protein | ||||
STRING | EMT05951 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-39 | TCP family protein |