PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 375aa MW: 41817.6 Da PI: 5.045 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.7 | 1.7e-47 | 14 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k......kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtd+elv +yL +kv+g + + +i+ev++yk+ePw+Lp k +++ k ewy F+ r++ky++g r rat +g+Wk+tgkd++++ EMT05948 14 LQPGFRFHPTDQELVIHYLYRKVHGLHDHH-AFIPEVHVYKHEPWELPgKsfspntD-ETGAKlEWYLFAVRARKYPNGLRMGRATVAGFWKSTGKDRPIM 112 579***********************9776.78***************546766431.223336************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g vg+kktLvf++grap g++t Wvmheyrl EMT05948 113 H-NGVIVGMKKTLVFHTGRAPCGTRTAWVMHEYRL 146 *.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-56 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.023 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-24 | 16 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSDIAPVQPL DLLLQPGFRF HPTDQELVIH YLYRKVHGLH DHHAFIPEVH VYKHEPWELP 60 GKSFSPNTDE TGAKLEWYLF AVRARKYPNG LRMGRATVAG FWKSTGKDRP IMHNGVIVGM 120 KKTLVFHTGR APCGTRTAWV MHEYRLHGQR NHHVQDAYAL CRVFKKNTMA PLIDLSSDDD 180 TYEDPMQSVP GGVDTDKDLM EHVSDGADSD KDPKHYVLAG IESDKYPMQS ILGGGGTDND 240 PILVESDVAY AGKEQMESVL CSVSTDKDHI QVESEFDGVH AGKGKKPFLT DRGGTSTGNT 300 GGANKDNEGM QPVYAGASAD EENSVNAWYT AALAEEDNSW MQPPSYDDWY TRVDLDKDDS 360 LMQFIFGDVM LLNAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-43 | 4 | 170 | 6 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-43 | 4 | 170 | 6 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-43 | 4 | 170 | 6 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-43 | 4 | 170 | 6 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-44 | 4 | 170 | 9 | 172 | NAC domain-containing protein 19 |
3swm_B | 9e-44 | 4 | 170 | 9 | 172 | NAC domain-containing protein 19 |
3swm_C | 9e-44 | 4 | 170 | 9 | 172 | NAC domain-containing protein 19 |
3swm_D | 9e-44 | 4 | 170 | 9 | 172 | NAC domain-containing protein 19 |
3swp_A | 9e-44 | 4 | 170 | 9 | 172 | NAC domain-containing protein 19 |
3swp_B | 9e-44 | 4 | 170 | 9 | 172 | NAC domain-containing protein 19 |
3swp_C | 9e-44 | 4 | 170 | 9 | 172 | NAC domain-containing protein 19 |
3swp_D | 9e-44 | 4 | 170 | 9 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-43 | 4 | 170 | 6 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-43 | 4 | 170 | 6 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175147.1 | 0.0 | NAC domain-containing protein 59-like | ||||
TrEMBL | M8BGT8 | 0.0 | M8BGT8_AEGTA; NAC domain-containing protein 74 | ||||
STRING | EMT05948 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 8e-59 | NAC domain containing protein 28 |