PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 23186.9 Da PI: 10.0234 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43 | 1.1e-13 | 131 | 174 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ g+W+A Irdps+ g +++lg+f +aeeAa+a++a +++++g EMT05935 131 RP-LGKWAAKIRDPSSKG--VHIWLGTFNSAEEAARAYDAKARRIYG 174 56.69********96643..***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.384 | 108 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-14 | 124 | 188 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-19 | 129 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.46E-16 | 130 | 176 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-15 | 130 | 176 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-6 | 131 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MFRRRVSDRS AALAASCSSE KKPRWGGNGG LRFTGHVERR GLGLDNDEQD FEADFENFEV 60 DSGDYDLELG RGGVTKKDDN DEVIGIKPFG AVKRFLSQDD LSTMPTAGFD GPSERPAKRK 120 RKNQFGDFNQ RPLGKWAAKI RDPSSKGVHI WLGTFNSAEE AARAYDAKAR RIYGKKYKVY 180 TKRENAGNWN SGPEKATLEL PILHISK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149547.1 | 1e-61 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-41 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M8AW80 | 1e-150 | M8AW80_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | EMT05935 | 1e-151 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-14 | related to AP2 12 |