PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05868 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | SRS | ||||||||
Protein Properties | Length: 202aa MW: 22065.8 Da PI: 8.7015 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 81.1 | 2.9e-25 | 57 | 108 | 103 | 154 |
DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 slP++v+++avfrcvrv+svddg +e+aYq+avsi+Gh+f+G+LydqG+++ EMT05868 57 DSLPRHVRAPAVFRCVRVTSVDDGADEFAYQAAVSINGHMFRGFLYDQGADN 108 45***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.9E-23 | 51 | 107 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 7.3E-25 | 59 | 105 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAPRRFGDGH VLGMDSRRRR KLSGVMVALM AERPHKVGAS FCSEDGPSED GDAPFRDSLP 60 RHVRAPAVFR CVRVTSVDDG ADEFAYQAAV SINGHMFRGF LYDQGADNGR ASNDEPSHAH 120 AAAVRSISDL HLGNASAVPP DMYNTVSGAL ILGGMGYANF QSFVSRSWKE NEKKTSQYFQ 180 ADSKLLGSRS WKPIMIILSS EK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374532 | 1e-131 | AK374532.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3068E07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M8BGL4 | 1e-147 | M8BGL4_AEGTA; Uncharacterized protein | ||||
STRING | EMT05868 | 1e-148 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3579 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 8e-21 | SHI-related sequence 7 |