PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT05403

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 354aa MW: 37511.4 Da PI: 5.5801

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT05403	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	242	265	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp C k+F+r n+++H ++ H EMT05403 242 FSCPVCFKTFNRYNNMQTHYKRkH 265 89*******************999 PP
2	zf-C2H2	11.3	0.0011	272	292	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ EMT05403 272 CRRCGKAFAVKGDWRTHEKNC 292 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.0E-11	238	288	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-6	242	266	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.658	242	269	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.003	242	265	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	244	265	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.6E-4	268	290	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	140	270	290	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.538	270	290	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MENPYTTFLK NYQQHRYYFS PTPVPAPVAS TTAPPPLSAY SSSPFFSPPP PPAPPSSPPL 60 REALPLLSLA PASRRSRERR SGPGPDDSDD GDEEDGEEGK QAPGPAASSS LHHNQQLAGR 120 QLFADLNSKA TDDAMDSEAG GAAGDVTVAL HIGLPSAGTA AGLISGISAA ARAARDDEEE 180 EDDRVSRELS GGGAEGDGDD DGENEAAVAP VLGFASTPIG RLNKGQYWIP TPTQILIGPT 240 QFSCPVCFKT FNRYNNMQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGKLWYCLC 300 GSEFKHKRSL KDHARAFGQG HGALGGAGLD DDDDCAVSDV EHDGAAAAVA ARSP

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MENPYTTFLK NYQQHRYYFS PTPVPAPVAS TTAPPPLSAY SSSPFFSPPP PPAPPSSPPL  60
REALPLLSLA PASRRSRERR SGPGPDDSDD GDEEDGEEGK QAPGPAASSS LHHNQQLAGR  120
QLFADLNSKA TDDAMDSEAG GAAGDVTVAL HIGLPSAGTA AGLISGISAA ARAARDDEEE  180
EDDRVSRELS GGGAEGDGDD DGENEAAVAP VLGFASTPIG RLNKGQYWIP TPTQILIGPT  240
QFSCPVCFKT FNRYNNMQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGKLWYCLC  300
GSEFKHKRSL KDHARAFGQG HGALGGAGLD DDDDCAVSDV EHDGAAAAVA ARSP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356814	0.0	AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180661.1	1e-157	zinc finger protein WIP2-like
Swissprot	Q9SVY1	9e-63	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	M8BF95	0.0	M8BF95_AEGTA; Protein TRANSPARENT TESTA 1
STRING	EMT05403	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	3e-42	WIP domain protein 4

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]