PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05058 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 220aa MW: 24154 Da PI: 4.8128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 53 | 99 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEde l ++v+++G+++W++Ia ++ gR k+c++rw ++l EMT05058 53 KTPWTQEEDEALRRGVREHGPKSWDAIALALP-GRASKSCRLRWCQHL 99 579*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 107 | 149 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++ +++G++ W+tIar++ gR+++ +k+rw++ EMT05058 107 PFTPEEDEEIIRRQHEFGNK-WATIARYLT-GRSDNAVKNRWNST 149 89******************.********9.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.642 | 48 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-30 | 51 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-17 | 52 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 53 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 55 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.82E-15 | 55 | 99 | No hit | No description |
SMART | SM00717 | 7.6E-14 | 104 | 152 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.927 | 106 | 154 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.3E-13 | 107 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-11 | 107 | 150 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 107 | 153 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDLLRRHFVQ ADIDAITSIR TSPRIPDYII AWAPEKDEGG GGGDVGRADG CKKTPWTQEE 60 DEALRRGVRE HGPKSWDAIA LALPGRASKS CRLRWCQHLS PELDSRPFTP EEDEEIIRRQ 120 HEFGNKWATI ARYLTGRSDN AVKNRWNSTL RKQQLGAHDT EAAADDQAVR VCLQLFPMTA 180 GVLEEEAEAA AAAEGDVATD LTLGLPGLGE ASAVDLSLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-30 | 53 | 153 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-30 | 53 | 153 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00400 | DAP | Transfer from AT3G50060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146291.1 | 1e-131 | transcription factor MYB44-like | ||||
TrEMBL | M8BE66 | 1e-159 | M8BE66_AEGTA; Uncharacterized protein | ||||
STRING | EMT05058 | 1e-160 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 4e-47 | myb domain protein 77 |