PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 36162.9 Da PI: 6.0947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd++++ G g+W++ ++ g++R++k+c++rw +yl EMT05007 15 KGPWTPEEDKLLVDYIQEKGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.5e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T +E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l EMT05007 68 RGRFTDDEEKLIIHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.097 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.38E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.17E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.692 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.45E-13 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGRSPCCNGE AGVKKGPWTP EEDKLLVDYI QEKGHGSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGR FTDDEEKLII HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLGM 120 GIDPVTHRPR TDLSLLAGLP GLLAAASNFG GSGVATAAWD INALKLQVDA AKFQLLQGLV 180 RALTTAAGPA PAPGMDNLMA LLALSNGGLH GGADQNMLQQ CQWNEMNNLP ALTSSAPTSG 240 MHNISGMLDG FSAGDGLSST ELGDHDGASG SNVTIYPMVA DDQECKNNGG GGMSCEQTPA 300 SSPFDGLESL NLMDDLNTDG GWKDLLEQIS WLNSSEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-29 | 15 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 7e-29 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-29 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727665 | 1e-134 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179054.1 | 0.0 | transcription factor MYB39-like | ||||
Swissprot | Q9SBF3 | 3e-80 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A453QDV5 | 0.0 | A0A453QDV5_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BPV4 | 0.0 | M8BPV4_AEGTA; Transcription factor MYB39 | ||||
STRING | EMT05007 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 8e-81 | myb domain protein 9 |
Publications ? help Back to Top | |||
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