PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04724 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20552.7 Da PI: 10.6072 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.2 | 1.2e-24 | 89 | 138 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr g++KKA+EL LCdaeva+++fs+ g+lyey+s EMT04724 89 RIEDRTSRQVRFSKRRSGLFKKAFELGLLCDAEVALLVFSPAGRLYEYAS 138 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.259 | 80 | 140 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-30 | 80 | 139 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.78E-31 | 81 | 139 | No hit | No description |
PRINTS | PR00404 | 3.3E-26 | 82 | 102 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-24 | 82 | 143 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-24 | 89 | 136 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 102 | 117 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 117 | 138 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MPFRHWKDYS DNDKTSAAAQ TKKEGLTQIF AAWWFVNVME GPVPSLSLIF ARSPLHPIIE 60 RRTPASERQP EEEEARRGMA RRGPVELRRI EDRTSRQVRF SKRRSGLFKK AFELGLLCDA 120 EVALLVFSPA GRLYEYASSR EKMKLIAKGD AETAVGIMRS RKEKDPKFFL SMCVTRKGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 82 | 139 | 3 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370352 | 2e-80 | AK370352.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109D12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149861.1 | 2e-66 | MADS-box transcription factor 51-like | ||||
Refseq | XP_020149862.1 | 2e-66 | MADS-box transcription factor 51-like | ||||
TrEMBL | M8ATH1 | 1e-128 | M8ATH1_AEGTA; Uncharacterized protein | ||||
STRING | EMT04724 | 1e-129 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 3e-23 | AGAMOUS-like 14 |