PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 220aa MW: 24479 Da PI: 8.2177 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.7 | 4.6e-12 | 2 | 46 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 WT+ Ed+ll + v + Gg+ W++I r ++ gR k+c++rw ++l EMT04618 2 WTKREDDLLREQVCRCGGPhKWDSICRGLP-GRNSKSCRLRWCQHL 46 ******************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 60 | 99 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 eEd l+v++ + +G++ W+tIa+ + gRt++ +k+rw+++ EMT04618 60 REEDMLIVKYQATYGNR-WSTIAEFLS-GRTDNAIKNRWNSV 99 69***************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.79E-24 | 1 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.908 | 1 | 50 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.3E-10 | 2 | 46 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-14 | 2 | 53 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-5 | 2 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-9 | 2 | 46 | No hit | No description |
PROSITE profile | PS51294 | 15.831 | 52 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-13 | 54 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 57 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.27E-11 | 57 | 100 | No hit | No description |
Pfam | PF00249 | 2.3E-11 | 60 | 100 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MWTKREDDLL REQVCRCGGP HKWDSICRGL PGRNSKSCRL RWCQHLDPRV EAVNVKPFPR 60 EEDMLIVKYQ ATYGNRWSTI AEFLSGRTDN AIKNRWNSVL HKHAPSLQVQ GHTRPWAPST 120 ARQAASPEVT PGCLPLFPLA SGDVRMSPRL TEVVSEAETS AAARECLELF PLAPGDIRGN 180 AGAAALSDMS CGAGDPLTEL RLWLAARVVF DVMPLQAYQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 4e-22 | 2 | 102 | 5 | 101 | MYB3 |
3zqc_D | 4e-22 | 2 | 102 | 5 | 101 | MYB3 |
3zqc_G | 4e-22 | 2 | 102 | 5 | 101 | MYB3 |
3zqc_J | 4e-22 | 2 | 102 | 5 | 101 | MYB3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951919 | 1e-121 | JF951919.1 Triticum aestivum clone TaMYB21 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198738.1 | 1e-159 | transcription factor MYB44-like, partial | ||||
TrEMBL | M8BCX6 | 1e-162 | M8BCX6_AEGTA; Transcription factor MYB44 | ||||
STRING | EMT04618 | 1e-163 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-31 | myb domain protein 77 |