PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04507 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C2H2 | ||||||||
Protein Properties | Length: 242aa MW: 26082.4 Da PI: 8.3647 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 91 | 114 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C Cg k+Fs +L++H + + EMT04507 91 HVCRRCGvKRFSVLADLRTHEKHC 114 79******************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MASLSWRKAV PQGPGEEPIT DRRGHGDQYK APGALARPGS PAPGAGTGRR FFYSCPYAGC 60 KRNREHRDFQ PLKTPVCVKN HYRRSHCDKS HVCRRCGVKR FSVLADLRTH EKHCGRDRWV 120 CSCGVSFSRK DKLFAHVAIF DGGHTPALPP SDDEAIGHCT AATAIDSILV PSSGQPLPVS 180 GGEAVNVVDQ SFSGQMLDGL SFSGAKGGMD DGRAKLSSPI GIDFCDFDGF DLLGAVAMDF 240 NF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366708 | 0.0 | AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188988.1 | 1e-160 | zinc finger protein STAR3-like | ||||
Swissprot | Q943I6 | 4e-61 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | M8BND2 | 1e-177 | M8BND2_AEGTA; Uncharacterized protein | ||||
STRING | EMT04507 | 1e-178 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-58 | C2H2 family protein |
Publications ? help Back to Top | |||
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