PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT04469

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 759aa MW: 85491.6 Da PI: 7.0007

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT04469	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	383.5	2.5e-117	384	755	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++ L++cA+av+++d + a++lL+++++++ +gd qRla++f+++L+arla+++s+ y+ l +++t+ s+ l+a++l++ ++P+ ++sh++ Nq+ EMT04469 384 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYFAACPFKRLSHFLSNQT 481 5789**********************************************************999999...9*********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 Il ++++++vHiiDf+i GlQWp+L++ L++R++gpp lRiTg++ pe+g +e++eetg+rLa++A++++vpfe++ +a+++e+++ e+L+v ++E EMT04469 482 ILSMTKNAKKVHIIDFGIYFGLQWPCLIRRLSKREGGPPILRITGIDVPEPGfrPTERIEETGQRLAEYAKKFEVPFEYHG-IASKWETIRAEDLKVGKDE 581 ***********************************************9*************************.7************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+lea++pr++++r+ +Er l+gre+ nv+ace EMT04469 582 VVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLEATVPRDDDQRRLIERDLFGREALNVIACE 682 ************************************************************************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g++r+er et+++W+ r +aGF + pl+++++ +ak ++ ++ + + ++e+sg+l++gWk+r +++++ W+ EMT04469 683 GSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVIKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAITTWK 755 ****************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.636	358	735	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.7E-115	384	755	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MTTATPVRWS LGARAERFFS CHQPGQAGYG SVEHQTISGS LIHSMIQFCG APEYFMFNDP 60 QPVIPHHVAA EPSHNAPVAT LSRATNTETD NPEDWEFISD ESLNYISRML MEEDIDEKVS 120 VYQEESATLR ATAKPFYDIL GHKFPPSPDR TLTTWSLDSP SESSSSGHAQ SLSSVGTSGS 180 IGGAVHSNQC HNVGHSEQLE AYRGLCGRSS QPLVAPPSGV SDAAESLEDP LITNGRIPEY 240 LFESLPTWDF RRGVEEAQKF LPGGDKLVID LEAAGVSKPQ EAVKDIPFNV SRTEVLKAKK 300 NRQSEDLDLI EGRNIKQSAF CSDEPDDWVE MFDDLFRQTE KKATVLREKM RSEASKNSQV 360 IQTKGTTGVK TRGRKPTKND VVDLRTILIH CAQAVAADDR RTANELLKQI KQHSKVNGDG 420 SQRLAFCFAQ GLEARLAGTG SQQYHRLVAK RTTASDMLKA YHLYFAACPF KRLSHFLSNQ 480 TILSMTKNAK KVHIIDFGIY FGLQWPCLIR RLSKREGGPP ILRITGIDVP EPGFRPTERI 540 EETGQRLAEY AKKFEVPFEY HGIASKWETI RAEDLKVGKD EVVIVNCLYR FRNLIDETVA 600 VDSPRNRVLN TIRQVNPAIF IHGIVNGSYS VPFFITRFRE ALFHFSALFD MLEATVPRDD 660 DQRRLIERDL FGREALNVIA CEGSDRVERP ETYKQWQVRN LRAGFVQSPL NQDIVIKAKD 720 KVKDIYHKDF VIDEDSGWLL QGWKGRIIYA ITTWKHNNS

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MTTATPVRWS LGARAERFFS CHQPGQAGYG SVEHQTISGS LIHSMIQFCG APEYFMFNDP  60
QPVIPHHVAA EPSHNAPVAT LSRATNTETD NPEDWEFISD ESLNYISRML MEEDIDEKVS  120
VYQEESATLR ATAKPFYDIL GHKFPPSPDR TLTTWSLDSP SESSSSGHAQ SLSSVGTSGS  180
IGGAVHSNQC HNVGHSEQLE AYRGLCGRSS QPLVAPPSGV SDAAESLEDP LITNGRIPEY  240
LFESLPTWDF RRGVEEAQKF LPGGDKLVID LEAAGVSKPQ EAVKDIPFNV SRTEVLKAKK  300
NRQSEDLDLI EGRNIKQSAF CSDEPDDWVE MFDDLFRQTE KKATVLREKM RSEASKNSQV  360
IQTKGTTGVK TRGRKPTKND VVDLRTILIH CAQAVAADDR RTANELLKQI KQHSKVNGDG  420
SQRLAFCFAQ GLEARLAGTG SQQYHRLVAK RTTASDMLKA YHLYFAACPF KRLSHFLSNQ  480
TILSMTKNAK KVHIIDFGIY FGLQWPCLIR RLSKREGGPP ILRITGIDVP EPGFRPTERI  540
EETGQRLAEY AKKFEVPFEY HGIASKWETI RAEDLKVGKD EVVIVNCLYR FRNLIDETVA  600
VDSPRNRVLN TIRQVNPAIF IHGIVNGSYS VPFFITRFRE ALFHFSALFD MLEATVPRDD  660
DQRRLIERDL FGREALNVIA CEGSDRVERP ETYKQWQVRN LRAGFVQSPL NQDIVIKAKD  720
KVKDIYHKDF VIDEDSGWLL QGWKGRIIYA ITTWKHNNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-48	388	755	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362796	0.0	AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184239.1	0.0	scarecrow-like protein 9
Refseq	XP_020184240.1	0.0	scarecrow-like protein 9
Refseq	XP_020184241.1	0.0	scarecrow-like protein 9
TrEMBL	M8ASQ5	0.0	M8ASQ5_AEGTA; Uncharacterized protein
STRING	EMT04469	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-171	GRAS family protein