PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04447
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 428aa    MW: 46076.2 Da    PI: 9.4053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04447genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-06185206223
               EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
               +C+ C +sF +++ L  H+r+H
  EMT04447 185 ECQLCFRSFASPDALSMHMRMH 206
               6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-5112140No hitNo description
PfamPF139128.8E-8114138IPR007087Zinc finger, C2H2
SMARTSM003555.4114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SMARTSM003550.013184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032184211IPR007087Zinc finger, C2H2
PfamPF138949.2E-4185206No hitNo description
SuperFamilySSF576671.04E-6185206No hitNo description
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6337364No hitNo description
PfamPF139121.8E-7342364IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471342365IPR007087Zinc finger, C2H2
SMARTSM003550.32342364IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAGAAVVNPS RVILSAGNML LHHGTTPPRA VDEGDEWTAA AARRAAGARC RHASGEEQLV  60
AEAATPAVSG AGRGAGDGRT TPGRGFGAGF GGRRRKRKMA RDLEDDMPPR GRKHWCKQCK  120
RSFPSGASLG GHMAVHRSRR KKQPSGTPRI AGERYGLRER CPKTSWLLDS SSSDDDRWAL  180
FPKTECQLCF RSFASPDALS MHMRMHKRRR KMASVGDGDH NAPLSAAPVM KRKRSRRMVM  240
DTVPSPVMKS YGIEEADAAR ILVTLSGDNG MCSASVDCGE GGEMDANVAL AFDTLVTETG  300
LSSPDHHGPV GDNELMEPEP SSSYEEGKFV SLSKVLKATA SYDCKLCGQV FTSGQGLGGH  360
RKRHSFADHG RVATTQPCEE LLPPDRRSLS LSPPAPSIWN CSSTIPKPEP NPLLVASSLW  420
DERVLGVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232783.11e-121uncharacterized protein LOC104582938
TrEMBLM8BN700.0M8BN70_AEGTA; Uncharacterized protein
STRINGEMT044470.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921