PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04282
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 1011aa    MW: 110640 Da    PI: 6.3535
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04282genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23250350198
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++
  EMT04282 250 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNDNNQLLLG 347
               99******************************9999996.9************************************************..6767777888 PP

               EE- CS
        B3  96 vfr 98 
               ++ 
  EMT04282 348 IRH 350
               875 PP
2Auxin_resp1171.6e-38376459183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k
    EMT04282 376 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 459
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-47237379IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40241365IPR015300DNA-binding pseudobarrel domain
CDDcd100178.67E-22249342No hitNo description
PfamPF023622.4E-21250350IPR003340B3 DNA binding domain
SMARTSM010194.5E-23250352IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111250352IPR003340B3 DNA binding domain
PfamPF065071.4E-33376459IPR010525Auxin response factor
PfamPF023094.0E-8873962IPR033389AUX/IAA domain
SuperFamilySSF542773.34E-6875952No hitNo description
PROSITE profilePS5174524.11876960IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1011 aa     Download sequence    Send to blast
MAIRGGEWSR FSGPLQAEAA AASWRRGNSR LDEAAAEDGG AVLGAEGEVG RCCREPGVAL  60
SSQLLRVPAA SRRSSVFSAS VASLDGEKAL HVRDAAVPPG KRWYISSHGP LINSAVQFST  120
CTSVCISSGL RIVECADWEQ RCLNSELWHA CAGPLVSLPA VGSRVIYFPQ GHSEQVAAST  180
NKEVDSQIPN YPNLPPQLIC QLHNVTMHAD AETDEVYAQM TLQPLSPEEQ KEPFLPIELG  240
AASKQPTNYF CKTLTASDTS THGGFSVPRR SAEKVFPPLD FSLQPPCQEL IAKDLHDNEW  300
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVIFIWND NNQLLLGIRH ANRPQTIMPS  360
SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFI IPLAKYVKSV YHTRVSVGMR  420
FRMLFETEES SVRRYMGTIT TISDLDSVRW PNSHWRSVKV GWDESTAGEK QPRVSLWEIE  480
PLTTFPMYPT AFPLRLKRPW ASGLPSMHDM FNGVKNDDFS RYSSLMWLGD GDRGAQSLNF  540
QGVGASPWLQ PKMDSPLLGL KPDTYQQMAA AALEEIRTGD PSKQSSALLQ FQQTQNPNGG  600
LNSVYANHVL QQMQYQAQQS SLQTVQHGHS QYSGNPGFLQ SQFQQLHLHN PPAPSQQGHQ  660
VIQQSHQEMQ QQLSSGCHRI SDVDSSMPGS ESASQSQSSF YQQNLLEGNN DPSLHLHNGF  720
RNFSSQDSSN LVSLPRTDQL MAPEGWPSKR LAVEPLGHIE SRSVQPKHEN VNHQSNMSHF  780
AGTLAPQSAR DSSSVQAYGA NVDNQFLSSS FAFQDGMAGA RGGSSSGTVS MAIPLLRYSG  840
EDLPPADTLA TSSCIGESGT FNSLDNMCGV NPSQDGTFVK VYKSGSPGRS LDITKFSSYY  900
ELRGELEHLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFVNSV GCIKILSQQE  960
VQQMVRGGGE GLLSSAPGAR MAQGNVCDGY SGGHDLQNLT GNMASVPPLD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-15814348051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3688220.0AK368822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2080I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168308.10.0auxin response factor 25-like isoform X2
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLM8BMR20.0M8BMR2_AEGTA; Auxin response factor
STRINGEMT042820.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]