PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 152aa MW: 16489.1 Da PI: 8.1428 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 97.4 | 2.1e-30 | 1 | 102 | 120 | 232 |
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220 +qGlQWp L++ LasRp+gpp++R+Tg+g+ s ++le+tg+rL++fA++lg+pfef + va++ +l++e+L v ++Ea+aV++ + h+l+d ++s EMT04109 1 MQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLH--HSLYDVTGSD 94 69****************************....***************************.7*************************9..8899888888 PP GRAS 221 eserdevLklvk 232 ++ +L l+k EMT04109 95 SN----TLCLIK 102 77....666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.656 | 1 | 152 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.2E-28 | 1 | 102 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MQGLQWPGLF HILASRPGGP PRVRLTGLGA SMDALEATGK RLSDFADTLG LPFEFCPVAD 60 KAGNLDPEKL GVTRREAVAV HWLHHSLYDV TGSDSNTLCL IKRYCRSTPL YSTSTFVSVC 120 CATPTLRHAA SIVKSTMESC LLSSLHFLTP PM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-57 | 1 | 140 | 138 | 267 | Protein SCARECROW |
5b3h_A | 1e-57 | 1 | 140 | 137 | 266 | Protein SCARECROW |
5b3h_D | 1e-57 | 1 | 140 | 137 | 266 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}. | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359827 | 1e-151 | AK359827.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1103O07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186306.1 | 1e-67 | protein SCARECROW 1-like | ||||
Swissprot | A2ZHL0 | 3e-64 | SCR2_ORYSI; Protein SCARECROW 2 | ||||
Swissprot | Q2QYF3 | 3e-64 | SCR2_ORYSJ; Protein SCARECROW 2 | ||||
TrEMBL | A0A453KCR5 | 1e-106 | A0A453KCR5_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8ARR3 | 1e-108 | M8ARR3_AEGTA; Uncharacterized protein | ||||
STRING | EMT04109 | 1e-108 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 2e-57 | GRAS family protein |