PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | AP2 | ||||||||
Protein Properties | Length: 689aa MW: 73256.3 Da PI: 5.9888 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.3 | 1.2e-10 | 279 | 335 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g EMT04052 279 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 335 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 41.8 | 2.7e-13 | 378 | 433 | 1 | 55 |
AP2 1 sgykGV....rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g EMT04052 378 SKYRGVtryvTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 433 688888888899**********988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.38E-14 | 279 | 345 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-8 | 279 | 335 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-16 | 279 | 345 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-11 | 280 | 343 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.108 | 280 | 343 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-21 | 280 | 349 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 281 | 292 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-15 | 378 | 443 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.33E-22 | 378 | 443 | No hit | No description |
Pfam | PF00847 | 1.3E-7 | 378 | 433 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-16 | 379 | 442 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-29 | 379 | 447 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.151 | 379 | 441 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 423 | 443 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MASGNDWLGF SLSGQENPQP HQDSPPPAGI DISGASDFYG VPTQPAPDAQ LGVPGHQPSY 60 GITEDFNRGA HETHDWNMRG DLDYNGGASE LSMLVGSSAV GGKRAAMEAE TEPKLEDFLG 120 CNSFVSEQDQ AGGFLFSGVP MTTSSNSNTG SNTMELSMIK SWLRDNQLPQ APHPQSQTGA 180 PAQQPQPHEE MGTDASSFDP RGRNGALVGA GSSQSLALSM STGSGSHLPM AVVSGSASGG 240 VSESTSSENK RASGAMDSPG GAVEAVARKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN 300 SCRREGQSRK GRQGGYDKED KAARAYDLAA LKYWGTTTTT NFPINTYEKE VDEMKHMTRQ 360 EYIAYLRRNS SGFSRGASKY RGVTRYVTRH HQHGRWQARI GRVAGNKDLY LGTFSTEEEA 420 AEAYDIAAIK FRGLNAVTNF DMSRYDVKTI LESSTLPVGG AARRLKEAAD HPEAGATIWR 480 AGMDGAIISQ LTDVGMGAPE AGATIWRAGM DGAIISQLTD VGMGAYASYH HGGPPTAFQQ 540 PSPLSVHYPY VAQPPRGWCK PEQDATVATQ SLQDLQQLHL GTAAHNYFQA SSSSTVYNGG 600 GVGGYQQGTG GNAFLMPAST VVDEQGHSST AANQGSTCSY GDEEGKLNLG YDAMAMASTG 660 ADPYAAASTV SIARANGYSN NWSSPFSGM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183326.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q8LSN2 | 1e-124 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | M8BM06 | 0.0 | M8BM06_AEGTA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
STRING | EMT04052 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-113 | AP2 family protein |