PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03941
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 89aa    MW: 10053.5 Da    PI: 9.0347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03941genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEdell  +v+ +G   +W + +++ g++R++k+c++rw++yl
         EMT03941 14 RGPWSPEEDELLRSYVRSHGAVgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                     89******************879*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23565IPR009057Homeodomain-like
PROSITE profilePS5129421.998966IPR017930Myb domain
SMARTSM007171.3E-111364IPR001005SANT/Myb domain
PfamPF002497.9E-161462IPR001005SANT/Myb domain
SuperFamilySSF466894.07E-191588IPR009057Homeodomain-like
CDDcd001675.37E-101662No hitNo description
Gene3DG3DSA:1.10.10.605.2E-56688IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDELLRSYVR SHGAVGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDMVIC SLYNSIGSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084529e-96AK108452.1 Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179126.14e-61myb-related protein Myb4-like
SwissprotQ9M2Y91e-48RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A453FC931e-60A0A453FC93_AEGTS; Uncharacterized protein
TrEMBLA0A453FCI31e-60A0A453FCI3_AEGTS; Uncharacterized protein
TrEMBLA0A453FCN07e-61A0A453FCN0_AEGTS; Uncharacterized protein
STRINGEMT039412e-60(Aegilops tauschii)
STRINGMLOC_71129.15e-60(Hordeum vulgare)
STRINGTraes_3B_3D67D3661.16e-60(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-51myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]